Factsheet for VIT_01s0010g03940.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70554	Soybean	endoplasmic reticulum	83.43	83.58
KRH01552	Soybean	plastid, vacuole	83.24	83.55
Solyc05g015860.2.1	Tomato	plastid	78.21	78.07
AT1G27980.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane, plastid	78.21	77.21
CDY11756	Canola	plastid	77.47	76.47
Bra010909.1-P	Field mustard	plastid	77.09	76.1
CDX90118	Canola	plastid	77.09	76.1
GSMUA_Achr6P06370_001	Banana	golgi, mitochondrion, plasma membrane, vacuole	75.05	75.19
Os01t0100900-01	Rice	nucleus	75.42	75.14
EES02668	Sorghum	cytosol	74.49	75.05
KRH25771	Soybean	cytosol	16.2	75.0
TraesCS3D01G085400.1	Wheat	plasma membrane	74.67	74.4
PGSC0003DMT400051021	Potato	plastid	75.61	74.36
TraesCS3B01G100600.1	Wheat	golgi	74.49	74.21
Zm00001d008389_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	74.86	72.96
TraesCS3A01G085400.2	Wheat	plasma membrane	74.86	72.56
Bra032860.1-P	Field mustard	cytosol	9.5	71.83
HORVU3Hr1G015150.11	Barley	cytosol	70.58	70.32
CDY48414	Canola	cytosol	26.82	62.07
CDY48416	Canola	cytosol	26.82	62.07
VIT_01s0011g06600.t01	Wine grape	cytosol	19.74	21.41
VIT_04s0079g00600.t01	Wine grape	cytosol	19.18	21.11
VIT_17s0000g00920.t01	Wine grape	cytosol	18.44	19.6
VIT_01s0011g06610.t01	Wine grape	cytosol	18.25	19.18

Protein Annotations

EntrezGene:100259208	wikigene:100259208	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:5.7.5.3	EMBL:AM454206
ProteinID:CAN72194	ProteinID:CAN72194.1	ProteinID:CCB51320	ProteinID:CCB51320.1	UniProt:F6HGC7	EMBL:FN595754
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030149
GO:GO:0030170	InterPro:IPR015421	InterPro:IPR015422	EntrezGene:LOC100259208	wikigene:LOC100259208	PFAM:PF00282
PANTHER:PTHR42735	PANTHER:PTHR42735:SF6	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase
SUPFAM:SSF53383	TIGR:TC69331	TIGR:TC70278	UniParc:UPI00015CDB0C	ArrayExpress:VIT_01s0010g03940	EnsemblPlantsGene:VIT_01s0010g03940
EnsemblPlants:VIT_01s0010g03940.t01	unigene:Vvi.13962	RefSeq:XP_002273495	RefSeq:XP_002273495.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:21477779..21484784

Molecular Weight (calculated)

58642.3 Da

IEP (calculated)

8.276

GRAVY (calculated)

0.023

Length

537 amino acids

Sequence
(BLAST)

001: MESSFFSHMR AAANSFLSEY EPLNLLLAPL LALLIARILQ CFVGVVNEKG LKATILGFLI TSVKLVPGVK RYIDAEKQKV VDKLQSGSKS KRDGWSTELP
101: RTGLGEGVIE KMKEEKRNDV VWQGKCSGTV YIGGSESEGH FSLINEAYSM FAHTNPLHMD VFQSVVRFEV EVVAMTAALL GSKEKASGGQ ICGNMTSGGT
201: ESILLAVKTS RDYMKAKRGI TRPEMIIPES AHSAYDKAAQ YFNIKLLRVP VNKEFQADVK GIRRHINKNT ILIVGSAPGF PHGIIDPIEE LGELASSFGI
301: CFHVDLCLGG FVLPFARKLG YPIPPFDFSV EGVTSISVDV HKYGLAPKGT SVVLYRNHDI RKHQFVAVTE WSGGLYVSPT IAGSRPGALI AGAWAAMISL
401: GQEGYLNNTR ETMEVSKKLQ RGIKDIPELF VIGRPDMTIV AFGSNVVDIF EVNDILSSKG WHLNALQRPN SIHICLTLQH VTILEDFLKD LKESVQTVKQ
501: NPGPINGGLA PIYGAAGKMP DRGMVGELLV NFMDSTC

Best Arabidopsis Sequence Match ( AT1G27980.1 )
(BLAST)

001: MDSFSYSSMK SMLIQARGSL NSRLSEFEPL VLLLVPLVSL FLAQIIGSVF GVVHEKGLKA CLIGFIMGLL KMIPGVQNYI DAEKQKVVDQ LQSGSSSKKK
101: NKTEVLPVKG LGVEVLEKME NEKRNDAIWQ GKCSGTVYIG GAESEGHFSL INQACSMFAH TNPLHIDVFQ SVVRFESEVV AMTAALLGSK ETASGGQICG
201: NMTSGGTESI VLAVKSSRDY MKYKKGITRP EMIIPESGHS AYDKAAQYFK IKLWRVPVDK DFRADVKATR RHINRNTIMI VGSAPGFPHG IIDPIEELGQ
301: LALSYGICFH VDLCLGGFVL PFARKLGYQI PPFDFSVQGV TSISVDVHKY GLAPKGTSTV LYRNHEIRKH QFVAVTEWSG GLYVSPTIAG SRPGSLVAGA
401: WAAMMSLGEE GYLQNTSKIM EASKRLEEGV REIHELFVIG KPDMTIVAFG SKALDIFEVN DIMSSKGWHL NALQRPNSIH ICITLQHVPV VDDFLRDLRE
501: AVETVKANPG PITGGLAPIY GAAGKMPDRG MVNELLVSFM DSQY

Arabidopsis Description

DPL1Sphingosine-1-phosphate lyase [Source:UniProtKB/Swiss-Prot;Acc:Q9C509]
SUBAcon: [endoplasmic reticulum,golgi,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.