CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
mitochondrion 1
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01552	Soybean	plastid, vacuole	96.83	97.01
VIT_01s0010g03940.t01	Wine grape	cytosol, golgi	83.58	83.43
KRH25771	Soybean	cytosol	17.35	80.17
AT1G27980.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane, plastid	78.54	77.39
CDY11756	Canola	plastid	78.36	77.21
Bra010909.1-P	Field mustard	plastid	77.61	76.47
CDX90118	Canola	plastid	77.61	76.47
Solyc05g015860.2.1	Tomato	plastid	76.49	76.21
GSMUA_Achr6P06370_001	Banana	golgi, mitochondrion, plasma membrane, vacuole	73.88	73.88
PGSC0003DMT400051021	Potato	plastid	73.51	72.16
Os01t0100900-01	Rice	nucleus	72.39	71.99
EES02668	Sorghum	cytosol	71.46	71.86
Bra032860.1-P	Field mustard	cytosol	9.51	71.83
TraesCS3B01G100600.1	Wheat	golgi	72.01	71.61
TraesCS3D01G085400.1	Wheat	plasma membrane	71.83	71.43
Zm00001d008389_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	72.01	70.05
TraesCS3A01G085400.2	Wheat	plasma membrane	72.01	69.68
HORVU3Hr1G015150.11	Barley	cytosol	68.28	67.9
CDY48416	Canola	cytosol	26.87	62.07
CDY48414	Canola	cytosol	26.87	62.07
KRH30893	Soybean	endoplasmic reticulum	15.67	20.59
KRH38971	Soybean	cytosol	19.03	20.48
KRH09492	Soybean	cytosol	19.03	20.44
KRH42467	Soybean	nucleus	17.72	19.27
KRH58569	Soybean	cytosol	17.54	19.07
KRH42468	Soybean	cytosol	17.35	18.86
KRH72934	Soybean	cytosol	17.35	18.49
KRH17286	Soybean	cytosol	17.35	18.49
KRG97998	Soybean	endoplasmic reticulum	17.16	18.29
KRH42466	Soybean	cytosol	15.3	17.41

Protein Annotations

EntrezGene:100794743	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:5.7.5.3	EMBL:ACUP02000782	EnsemblPlantsGene:GLYMA_02G097200
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	UniProt:I1JDU3	InterPro:IPR015421
InterPro:IPR015422	EnsemblPlants:KRH70554	ProteinID:KRH70554	ProteinID:KRH70554.1	PFAM:PF00282	PANTHER:PTHR42735
PANTHER:PTHR42735:SF6	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383
TMHMM:TMhelix	UniParc:UPI0002337544	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:8731749..8737457

Molecular Weight (calculated)

58306.7 Da

IEP (calculated)

8.615

GRAVY (calculated)

0.007

Length

536 amino acids

Sequence
(BLAST)

001: MDSSISHFRA SANSFLSQYE PLALLLAPLL SLLFALALRS FFHLLSENGL KATLLGFLIN SFKLVPGVKR YIDAEKQKVV DKLQSDSKSK REGWKTELPS
101: TGLGTTVLEK MREEKINDAV WQGKCSGTVY IGGSESDGHF SLINEACSMF AHTNPLHLDV FKSVARFEAE VVAMTAALLG SKEKSSGGQI CGNMTSGGTE
201: SILLAVKSSR DYMKSKKGIT RPEMIIPESG HSAYDKAAQY FNIKLWRAPV NKNFQADAKA IRRHINKNTI LIVGSAPGFP HGVIDPIEEL GHLASSFGIC
301: FHVDLCLGGF VLPFARELGY HIPPFDFSVK GVSSISVDVH KYGLAPKGTS VVLYRNHEIR KHQFVAVTEW SGGLYVSPTI AGSRPGSLIA GAWAAMMSLG
401: KEGYLKNTKA IMEGSRRIQK GIEEIAELFI VGKPDMTIVA FGSAVLDIFE VNDVMSSKGW HLNALQRPNS IHICVTLQHV PIVEDFLNDL KESVKTVKAN
501: PGPISGGLAP IYGAAGKMPD RGMVQELLVD YMDGTC

Best Arabidopsis Sequence Match ( AT1G27980.1 )
(BLAST)

001: MDSFSYSSMK SMLIQARGSL NSRLSEFEPL VLLLVPLVSL FLAQIIGSVF GVVHEKGLKA CLIGFIMGLL KMIPGVQNYI DAEKQKVVDQ LQSGSSSKKK
101: NKTEVLPVKG LGVEVLEKME NEKRNDAIWQ GKCSGTVYIG GAESEGHFSL INQACSMFAH TNPLHIDVFQ SVVRFESEVV AMTAALLGSK ETASGGQICG
201: NMTSGGTESI VLAVKSSRDY MKYKKGITRP EMIIPESGHS AYDKAAQYFK IKLWRVPVDK DFRADVKATR RHINRNTIMI VGSAPGFPHG IIDPIEELGQ
301: LALSYGICFH VDLCLGGFVL PFARKLGYQI PPFDFSVQGV TSISVDVHKY GLAPKGTSTV LYRNHEIRKH QFVAVTEWSG GLYVSPTIAG SRPGSLVAGA
401: WAAMMSLGEE GYLQNTSKIM EASKRLEEGV REIHELFVIG KPDMTIVAFG SKALDIFEVN DIMSSKGWHL NALQRPNSIH ICITLQHVPV VDDFLRDLRE
501: AVETVKANPG PITGGLAPIY GAAGKMPDRG MVNELLVSFM DSQY

Arabidopsis Description

DPL1Sphingosine-1-phosphate lyase [Source:UniProtKB/Swiss-Prot;Acc:Q9C509]
SUBAcon: [endoplasmic reticulum,golgi,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.