Factsheet for PGSC0003DMT400051021

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
endoplasmic reticulum 3
extracellular 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g015860.2.1	Tomato	plastid	92.12	93.49
VIT_01s0010g03940.t01	Wine grape	cytosol, golgi	74.36	75.61
KRH01552	Soybean	plastid, vacuole	72.71	74.21
KRH70554	Soybean	endoplasmic reticulum	72.16	73.51
KRH25771	Soybean	cytosol	15.2	71.55
AT1G27980.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane, plastid	70.88	71.14
Bra010909.1-P	Field mustard	plastid	69.78	70.04
CDY11756	Canola	plastid	69.78	70.04
CDX90118	Canola	plastid	69.78	70.04
Os01t0100900-01	Rice	nucleus	67.77	68.65
GSMUA_Achr6P06370_001	Banana	golgi, mitochondrion, plasma membrane, vacuole	66.85	68.1
TraesCS3D01G085400.1	Wheat	plasma membrane	67.03	67.9
TraesCS3B01G100600.1	Wheat	golgi	67.03	67.9
EES02668	Sorghum	cytosol	66.12	67.73
TraesCS3A01G085400.2	Wheat	plasma membrane	67.4	66.43
Zm00001d008389_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	66.67	66.06
HORVU3Hr1G015150.11	Barley	cytosol	64.29	65.12
CDY48414	Canola	cytosol	22.89	53.88
CDY48416	Canola	cytosol	22.89	53.88
Bra032860.1-P	Field mustard	cytosol	6.23	47.89
PGSC0003DMT400079706	Potato	cytosol	17.77	19.32
PGSC0003DMT400058594	Potato	cytosol	17.22	18.91
PGSC0003DMT400034693	Potato	cytosol	16.85	18.33
PGSC0003DMT400006326	Potato	cytosol	4.03	15.38
PGSC0003DMT400003251	Potato	cytosol	3.48	12.42

Protein Annotations

MapMan:5.7.5.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752
GO:GO:0030149	GO:GO:0030170	UniProt:M1BR59	PFAM:PF00282	EnsemblPlantsGene:PGSC0003DMG400019810	PGSC:PGSC0003DMG400019810
EnsemblPlants:PGSC0003DMT400051021	PANTHER:PTHR42735	PANTHER:PTHR42735:SF6	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383
UniParc:UPI000294AAFE	SEG:seg	:	:	:	:

Description

Sphingosine phosphate lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400019810]

Coordinates

chr5:+:15144808..15151200

Molecular Weight (calculated)

60513.9 Da

IEP (calculated)

9.405

GRAVY (calculated)

0.014

Length

546 amino acids

Sequence
(BLAST)

001: MAFPIPPWLN QYRASANSFL SQYEPLILLI TPLFSLLIAR ILQSIFLVIH ERGLKATIIS FVMSAIKLVP GVKKYIDSEK QKIVDKLQGS SNRDGWRTEL
101: PKTGLGDNVL VQMRDEKQKD VTWQGKCSGT VYIGGNENEG HFSLINEACS MFAHTNPLHL SVFPSVVRFE AEVVAMTAAI LGSKEKASGG QICGNMTSGG
201: TESILLAVKS SRDYMKAKKG ITKPEMIIPV SAHSAYDKAA QYFKIKLWRV PVDKEFRADV KAIKRYINKN TIMELGDLAS SYQICFHVDL CLGGFVLPFA
301: RKLGYPVPPF DFTVQGVTSI SVDVHKYGLA PKGTSVVLYR NREIRKKKKL YSLYLQKRGN HSYEVLMTYI PCIHMIVTEW TGGLYVSPTI AGSRAGGLIA
401: GAWAAMISLG SEGYLENTKE IMEASKRIQK GIQDIPELFV IGRPDMSIIA FGSDVVDIFE VNDILSSKGW HLNALQRPNS VHICVTLQHV SVVQIFLKDL
501: RDSVQTVKEN PGPVNGGFAP IYGAAGKMPD RVMVQDLLVE FMDSSY

Best Arabidopsis Sequence Match ( AT1G27980.1 )
(BLAST)

001: MDSFSYSSMK SMLIQARGSL NSRLSEFEPL VLLLVPLVSL FLAQIIGSVF GVVHEKGLKA CLIGFIMGLL KMIPGVQNYI DAEKQKVVDQ LQSGSSSKKK
101: NKTEVLPVKG LGVEVLEKME NEKRNDAIWQ GKCSGTVYIG GAESEGHFSL INQACSMFAH TNPLHIDVFQ SVVRFESEVV AMTAALLGSK ETASGGQICG
201: NMTSGGTESI VLAVKSSRDY MKYKKGITRP EMIIPESGHS AYDKAAQYFK IKLWRVPVDK DFRADVKATR RHINRNTIMI VGSAPGFPHG IIDPIEELGQ
301: LALSYGICFH VDLCLGGFVL PFARKLGYQI PPFDFSVQGV TSISVDVHKY GLAPKGTSTV LYRNHEIRKH QFVAVTEWSG GLYVSPTIAG SRPGSLVAGA
401: WAAMMSLGEE GYLQNTSKIM EASKRLEEGV REIHELFVIG KPDMTIVAFG SKALDIFEVN DIMSSKGWHL NALQRPNSIH ICITLQHVPV VDDFLRDLRE
501: AVETVKANPG PITGGLAPIY GAAGKMPDRG MVNELLVSFM DSQY

Arabidopsis Description

DPL1Sphingosine-1-phosphate lyase [Source:UniProtKB/Swiss-Prot;Acc:Q9C509]
SUBAcon: [endoplasmic reticulum,golgi,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.