Factsheet for Solyc04g025530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 3
plastid 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003251	Potato	cytosol	29.61	95.42
Solyc01g005000.2.1	Tomato	cytosol	90.47	92.15
CDY09396	Canola	cytosol	87.42	87.42
CDY15807	Canola	cytosol	87.42	87.42
GSMUA_Achr8P30730_001	Banana	cytosol	83.57	86.92
Bra026621.1-P	Field mustard	cytosol	86.82	86.82
VIT_01s0011g06600.t01	Wine grape	cytosol	86.82	86.46
Bra017429.1-P	Field mustard	cytosol	86.21	86.21
CDY04111	Canola	cytosol	86.21	86.21
VIT_04s0079g00600.t01	Wine grape	cytosol	84.58	85.45
CDY56295	Canola	cytosol	85.6	85.43
Solyc11g011920.1.1	Tomato	plastid	86.41	84.69
Solyc05g054050.2.1	Tomato	plastid	84.79	84.1
GSMUA_Achr4P31270_001	Banana	cytosol	81.54	82.21
AT2G02000.1	Thale cress	cytosol	83.37	82.2
AT2G02010.2	Thale cress	plastid	86.21	77.98
Solyc03g098240.2.1	Tomato	plastid	75.46	74.1
Solyc05g015860.2.1	Tomato	plastid	19.68	18.03

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752
GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	UniProt:K4BQZ8	PFAM:PF00282	PANTHER:PTHR43321
PANTHER:PTHR43321:SF2	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	EnsemblPlantsGene:Solyc04g025530.2
EnsemblPlants:Solyc04g025530.2.1	TIGRFAMs:TIGR01788	UniParc:UPI0002765A39	:	:	:

Description

Glutamate decarboxylase [Source:UniProtKB/TrEMBL;Acc:K4BQZ8]

Coordinates

chr4:+:22348272..22352834

Molecular Weight (calculated)

56165.5 Da

IEP (calculated)

5.036

GRAVY (calculated)

-0.203

Length

493 amino acids

Sequence
(BLAST)

001: MVLSKTSSES DVSVHSTFAS RYVRTSLPRF EMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLMMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIARLFNA PLEEEEAAIG VGTVGSSEAI MLAGLAFKRN WQNKRKAEGK PYDKPNIVTG ANVQVCWEKF ANYFEVELKE VKLREGYYVM DPMKAVEMVD
201: DNTICVAAIL GSTLNGEFED VKLLNDLLIQ KNKQTGWDTP IHVDAASGGF IAPFIYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RTKQDLPEQL
301: IFHINYLGAD QLTFTLNFSK GSSQIIAQYY QLIRLGYEGY RNVMENCREN AIVLREGLEK TGRFNIVSKD EGVPLVAFSL KDNSLHNEFE VSETLRRFGW
401: IVPAYTMPAD AQHITVLRVV IREDFSRTLA ERLVFDIVKV LHELDTLPAR LSAKMEENLV IENNNGKKTE IEVQREVTDF WKKFVLARKA AVC

Best Arabidopsis Sequence Match ( AT2G02010.2 )
(BLAST)

001: MKRHILSTIY TICSSSSNST HSSSTTKQKH YYTFFPLVHF KPKNQSSKLK EDMVLSKTVS ESDVSIHSTF ASRYVRNSLP RFEMPENSIP KEAAYQIIND
101: ELMLDGNPRL NLASFVTTWM EPECDKLMME SINKNYVDMD EYPVTTELQN RCVNMIARLF NAPLGDGEAA VGVGTVGSSE AIMLAGLAFK RQWQNKRKAQ
201: GLPYDKPNIV TGANVQVCWE KFARYFEVEL KEVNLREDYY VMDPVKAVEM VDENTICVAA ILGSTLTGEF EDVKLLNDLL VEKNKQTGWD TPIHVDAASG
301: GFIAPFLYPE LEWDFRLPLV KSINVSGHKY GLVYAGIGWV VWRTKTDLPD ELIFHINYLG ADQPTFTLNF SKGSSQVIAQ YYQLIRLGFE GYRNVMDNCR
401: ENMMVLRQGL EKTGRFKIVS KENGVPLVAF SLKDSSRHNE FEVAHTLRRF GWIVPAYTMP ADAQHVTVLR VVIREDFSRT LAERLVADFE KVLHELDTLP
501: ARVHAKMANG KVNGVKKTPE ETQREVTAYW KKLLETKKTN KNTIC

Arabidopsis Description

GAD4glutamate decarboxylase 4 [Source:TAIR;Acc:AT2G02010]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.