CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04111	Canola	cytosol	98.18	98.38
CDY15807	Canola	cytosol	96.15	96.35
CDY09396	Canola	cytosol	95.75	95.94
AT2G02000.1	Thale cress	cytosol	90.08	89.0
GSMUA_Achr8P30730_001	Banana	cytosol	82.79	86.29
VIT_01s0011g06600.t01	Wine grape	cytosol	86.23	86.06
Solyc04g025530.2.1	Tomato	plastid	85.43	85.6
AT2G02010.2	Thale cress	plastid	94.33	85.5
CDY16935	Canola	cytosol	84.21	84.55
VIT_04s0079g00600.t01	Wine grape	cytosol	83.4	84.43
PGSC0003DMT400058594	Potato	cytosol	84.01	83.5
Solyc01g005000.2.1	Tomato	cytosol	81.58	83.26
CDX78740	Canola	cytosol	67.61	82.67
CDX78739	Canola	cytosol, plastid	82.19	81.85
CDY68511	Canola	cytosol, mitochondrion	66.6	81.23
CDY07474	Canola	cytosol	81.17	81.17
GSMUA_Achr4P31270_001	Banana	cytosol	80.16	80.98
CDY28614	Canola	cytosol	64.17	80.87
CDY39258	Canola	cytosol	80.77	80.77
CDY02710	Canola	cytosol	79.96	80.28
CDY12173	Canola	cytosol	55.06	78.61
CDX92158	Canola	cytosol	43.93	78.34
CDX85460	Canola	cytosol	74.09	78.21
CDY46883	Canola	cytosol	74.29	75.98
CDY49834	Canola	cytosol	73.68	75.36
PGSC0003DMT400003251	Potato	cytosol	21.86	70.59
CDY71197	Canola	cytosol	13.97	66.35
CDX87977	Canola	cytosol	29.96	64.91
CDX95824	Canola	cytosol	28.95	64.71
CDX70751	Canola	cytosol, plastid	83.6	64.33
CDY12174	Canola	cytosol	15.18	61.98
CDX70758	Canola	cytosol	14.17	59.32
CDX87975	Canola	cytosol	11.94	57.84
CDX78746	Canola	cytosol	16.8	54.25
CDX78742	Canola	cytosol	9.92	51.58
CDY11756	Canola	plastid	19.43	17.65
CDX90118	Canola	plastid	19.43	17.65
CDY48416	Canola	cytosol	7.09	15.09
CDY48414	Canola	cytosol	7.09	15.09

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	GO:A0A078J2D1	UniProt:A0A078J2D1	EnsemblPlants:CDY56295	ProteinID:CDY56295	ProteinID:CDY56295.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170
EnsemblPlantsGene:GSBRNA2T00019407001	InterPro:Glutamate_decarboxylase	InterPro:IPR015421	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF2
MetaCyc:PWY-4321	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788
UniParc:UPI0004EE9850	SEG:seg	:	:	:	:

Description

BnaC09g52280DGlutamate decarboxylase [Source:UniProtKB/TrEMBL;Acc:A0A078J2D1]

Coordinates

chrLK033476:+:375..2916

Molecular Weight (calculated)

56200.5 Da

IEP (calculated)

5.805

GRAVY (calculated)

-0.288

Length

494 amino acids

Sequence
(BLAST)

001: MVLSKTASET DVSIHSTFAS RYVRNSLPRF EMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLMMESI NKNYVDMDEY PVTTELQNRC
101: VNMIARLFNA PLDDGEAAVG VGTVGSSEAI MLAGLAFKRQ WQNKRKAQGL PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLREGYYVM DPEKAVEMVD
201: ENTICVAAIL GSRLTGEFED VKLLNDLLVE KNKLTRWDTG IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVVW RTKSDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGFEGY RNVMDNCREN MMVLREGLEK TGRFNIVSKE NGVPLVAFSL KDSSRHDEFE VAETLRRFGW
401: IVPAYTMPAD AEHVTVLRVV IREDFSRTLA ERLVADFEKV LRELETLPAK VHAKMANGKA KGVKKTEEET TREVTAYWKK VVETKKTNKN KICS

Best Arabidopsis Sequence Match ( AT2G02010.2 )
(BLAST)

001: MKRHILSTIY TICSSSSNST HSSSTTKQKH YYTFFPLVHF KPKNQSSKLK EDMVLSKTVS ESDVSIHSTF ASRYVRNSLP RFEMPENSIP KEAAYQIIND
101: ELMLDGNPRL NLASFVTTWM EPECDKLMME SINKNYVDMD EYPVTTELQN RCVNMIARLF NAPLGDGEAA VGVGTVGSSE AIMLAGLAFK RQWQNKRKAQ
201: GLPYDKPNIV TGANVQVCWE KFARYFEVEL KEVNLREDYY VMDPVKAVEM VDENTICVAA ILGSTLTGEF EDVKLLNDLL VEKNKQTGWD TPIHVDAASG
301: GFIAPFLYPE LEWDFRLPLV KSINVSGHKY GLVYAGIGWV VWRTKTDLPD ELIFHINYLG ADQPTFTLNF SKGSSQVIAQ YYQLIRLGFE GYRNVMDNCR
401: ENMMVLRQGL EKTGRFKIVS KENGVPLVAF SLKDSSRHNE FEVAHTLRRF GWIVPAYTMP ADAQHVTVLR VVIREDFSRT LAERLVADFE KVLHELDTLP
501: ARVHAKMANG KVNGVKKTPE ETQREVTAYW KKLLETKKTN KNTIC

Arabidopsis Description

GAD4glutamate decarboxylase 4 [Source:TAIR;Acc:AT2G02010]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.