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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY68511 Canola cytosol, mitochondrion 96.53 96.3
CDX78742 Canola cytosol 19.8 84.21
Bra008561.1-P Field mustard cytosol 97.52 83.65
CDY12173 Canola cytosol 71.53 83.53
CDY28614 Canola cytosol 80.45 82.91
KRH30893 Soybean endoplasmic reticulum 83.42 82.6
CDY16935 Canola cytosol 97.28 79.88
CDY02710 Canola cytosol 93.56 76.83
AT5G17330.1 Thale cress cytosol 93.56 75.3
CDX78739 Canola cytosol, plastid 89.85 73.19
CDX85460 Canola cytosol 84.65 73.08
CDX70758 Canola cytosol 21.04 72.03
CDX78746 Canola cytosol 27.23 71.9
VIT_04s0079g00600.t01 Wine grape cytosol 84.41 69.88
CDY15807 Canola cytosol 84.16 68.97
VIT_01s0011g06600.t01 Wine grape cytosol 84.16 68.69
CDY09396 Canola cytosol 83.66 68.56
GSMUA_Achr8P30730_001 Banana cytosol 80.2 68.35
CDY07474 Canola cytosol 83.42 68.22
CDY04111 Canola cytosol 83.17 68.15
CDY39258 Canola cytosol 83.17 68.02
CDY56295 Canola cytosol 82.67 67.61
KRH72934 Soybean cytosol 83.91 67.4
KRH17286 Soybean cytosol 83.66 67.2
GSMUA_Achr4P31270_001 Banana cytosol 80.94 66.87
KRG97998 Soybean endoplasmic reticulum 83.17 66.8
CDX87977 Canola cytosol 37.38 66.23
CDX95824 Canola cytosol 35.15 64.25
CDX87975 Canola cytosol 15.59 61.76
CDY46883 Canola cytosol 73.27 61.28
CDY49834 Canola cytosol 72.52 60.66
CDX70751 Canola cytosol, plastid 94.31 59.35
CDX92158 Canola cytosol 36.39 53.07
CDY48416 Canola cytosol 9.65 16.81
CDY48414 Canola cytosol 9.65 16.81
CDX90118 Canola plastid 22.03 16.36
CDY11756 Canola plastid 22.03 16.36
CDY71197 Canola cytosol 1.49 5.77
CDY12174 Canola cytosol 1.24 4.13
Protein Annotations
KEGG:00250+4.1.1.15KEGG:00410+4.1.1.15KEGG:00430+4.1.1.15KEGG:00650+4.1.1.15Gene3D:3.40.640.10Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1GO:A0A078CPF5EnsemblPlants:CDX78740ProteinID:CDX78740ProteinID:CDX78740.1GO:GO:0003674
GO:GO:0003824GO:GO:0004351GO:GO:0005488GO:GO:0006536GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016831GO:GO:0019752GO:GO:0030170EnsemblPlantsGene:GSBRNA2T00130171001InterPro:Glutamate_decarboxylase
InterPro:IPR015421PFAM:PF00282PANTHER:PTHR43321PANTHER:PTHR43321:SF9MetaCyc:PWY-4321InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_majorInterPro:PyrdxlP-dep_de-COaseSUPFAM:SSF53383TIGRFAMs:TIGR01788UniParc:UPI0004EDF206:
Description
BnaA03g06520D
Coordinates
chrLK031815:+:2021302..2025956
Molecular Weight (calculated)
46007.4 Da
IEP (calculated)
6.421
GRAVY (calculated)
-0.289
Length
404 amino acids
Sequence
(BLAST)
001: MMKTRNSYDN RCVNMIAHLF NAPLGETETA VGVGTVGSSE AIMLAGLAFK RKWQNKRKAE GKPFDKPNIV TGANVQVCWE KFARYFEVEL KEVKLSEGYY
101: VMDPEKAVEM VDENTICVAA ILGSTLNGEF EDVKLLNDLL VIKNKETGWD TPIHVDAASG GFIAPFLYPE LEWDFRLPLV KSINVSGHKY GLVYAGIGWV
201: VWRNKEDLPE ELIFHINYLG ADQPTFTLNF SKGSSQVIAQ YYQLIRLGHE GYRNVMENCR ENMIVLREGL EKTGRFNIVS KEEGVPLVAF SLKDSSSHTE
301: FEISDMLRRY GWIVPAYTMP PNAQHITVLR VVIREDFSRT LAERLVIDIE KVMRELDELP SRKSEANGDN LMVTVKKTDM EKQREIINGW KKFVSDRKKT
401: NGIC
Best Arabidopsis Sequence Match ( AT1G65960.2 )
(BLAST)
001: MVLTKTATND ESVCTMFGSR YVRTTLPKYE IGENSIPKDA AYQIIKDELM LDGNPRLNLA SFVTTWMEPE CDKLIMDSIN KNYVDMDEYP VTTELQNRCV
101: NIIARLFNAP LEESETAVGV GTVGSSEAIM LAGLAFKRKW QNKRKAEGKP YDKPNIVTGA NVQVCWEKFA RYFEVELKEV NLSEGYYVMD PDKAAEMVDE
201: NTICVAAILG STLNGEFEDV KRLNDLLVKK NEETGWNTPI HVDAASGGFI APFIYPELEW DFRLPLVKSI NVSGHKYGLV YAGIGWVVWR AAEDLPEELI
301: FHINYLGADQ PTFTLNFSKG SSQIIAQYYQ LIRLGFEGYK NVMENCIENM VVLKEGIEKT ERFNIVSKDQ GVPVVAFSLK DHSFHNEFEI SEMLRRFGWI
401: VPAYTMPADA QHITVLRVVI REDFSRTLAE RLVADISKVL HELDTLPSKI SKKMGIEGIA ENVKEKKMEK EILMEVIVGW RKFVKERKKM NGVC
Arabidopsis Description
GAD2Glutamate decarboxylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42472]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.