Factsheet for Bra023612.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008561.1-P	Field mustard	cytosol	91.31	91.51
CDX85460	Canola	cytosol	90.68	91.45
Bra006397.1-P	Field mustard	cytosol	91.95	86.45
Bra006399.1-P	Field mustard	cytosol, mitochondrion	16.95	84.21
AT5G17330.1	Thale cress	cytosol	89.19	83.86
Bra006396.1-P	Field mustard	cytosol, plastid	87.08	82.86
Bra004137.1-P	Field mustard	cytosol	67.58	81.38
KRH30893	Soybean	endoplasmic reticulum	69.7	80.64
VIT_04s0079g00600.t01	Wine grape	cytosol	80.51	77.87
VIT_01s0011g06600.t01	Wine grape	cytosol	81.36	77.58
Bra026621.1-P	Field mustard	cytosol	80.08	76.67
GSMUA_Achr8P30730_001	Banana	cytosol	76.69	76.37
Bra017429.1-P	Field mustard	cytosol	79.45	76.06
KRH72934	Soybean	cytosol	80.93	75.94
Bra021090.1-P	Field mustard	cytosol	78.6	75.1
KRH17286	Soybean	cytosol	79.87	74.95
GSMUA_Achr4P31270_001	Banana	cytosol	77.33	74.64
KRG97998	Soybean	endoplasmic reticulum	79.24	74.35
Bra006404.1-P	Field mustard	cytosol	23.52	72.55
Bra022241.1-P	Field mustard	cytosol	71.61	68.98
Bra021272.1-P	Field mustard	cytosol	71.19	68.29
Bra032860.1-P	Field mustard	cytosol	3.18	21.13
Bra010909.1-P	Field mustard	plastid	19.7	17.1

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	EnsemblPlantsGene:Bra023612	EnsemblPlants:Bra023612.1	EnsemblPlants:Bra023612.1-P	GO:GO:0003674	GO:GO:0003824
GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421
UniProt:M4E4A9	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF9	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major
InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788	UniParc:UPI00025430C7	SEG:seg	:

Description

AT5G17330 (E=1e-241) GAD, GAD1 | GAD; calmodulin binding / glutamate decarboxylase

Coordinates

chrA02:+:4189724..4191899

Molecular Weight (calculated)

53722.8 Da

IEP (calculated)

6.163

GRAVY (calculated)

-0.289

Length

472 amino acids

Sequence
(BLAST)

001: MPGNSIPNEA AYQIMHDELM LDGNSRLNLA SFLTTWMEPE CDKLIMASIN KNYVEKHAYP ITTELQNRCV NMIANLFNAP LGETETAVGV GTVGSSEAIM
101: LAGLAFKRKW QNKRKAEGKP FNKPNIVTGA NVHEVCWEKF ARYFEVELKK VKLSEGYYVM DPEKAVEMVD ENTICVAAIL GSTLNGEFED VKLLNDLLVL
201: KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYEGIGWVVW RTKEDLPEEL IFHVNYLGVD QPTFTLNFSK GSSQVIAQYY
301: QLIRLGHEGY RNVMENCREN MIVLREGLKK TEKFNIISKD EGVPLVAFSL KDSSSHTEFE ISHMLRRYGW IVPAYTMPPN AQHITVLRVV VREDFSRTLA
401: ERLVIDIEKV MRELDELPSR VVHKISLGEE KSEANGDKLR VTVKKSDMET PREIINDWKK LVPDRKKTNG IC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.