Factsheet for Bra006397.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008561.1-P	Field mustard	cytosol	91.63	97.66
AT5G17330.1	Thale cress	cytosol	95.22	95.22
Bra006396.1-P	Field mustard	cytosol, plastid	92.83	93.95
Bra023612.1-P	Field mustard	cytosol	86.45	91.95
Bra006399.1-P	Field mustard	cytosol, mitochondrion	17.13	90.53
VIT_04s0079g00600.t01	Wine grape	cytosol	84.86	87.3
VIT_01s0011g06600.t01	Wine grape	cytosol	85.26	86.46
GSMUA_Achr8P30730_001	Banana	cytosol	81.47	86.29
Bra026621.1-P	Field mustard	cytosol	84.46	86.0
Bra017429.1-P	Field mustard	cytosol	83.67	85.19
KRH72934	Soybean	cytosol	85.06	84.89
KRG97998	Soybean	endoplasmic reticulum	84.86	84.69
KRH17286	Soybean	cytosol	84.66	84.49
Bra004137.1-P	Field mustard	cytosol	65.74	84.18
KRH30893	Soybean	endoplasmic reticulum	67.93	83.58
GSMUA_Achr4P31270_001	Banana	cytosol	81.08	83.23
Bra021090.1-P	Field mustard	cytosol	80.88	82.19
Bra006404.1-P	Field mustard	cytosol	23.9	78.43
Bra022241.1-P	Field mustard	cytosol	73.51	75.31
Bra021272.1-P	Field mustard	cytosol	73.31	74.8
Bra032860.1-P	Field mustard	cytosol	2.99	21.13
Bra010909.1-P	Field mustard	plastid	19.52	18.01

Protein Annotations

KEGG:00250+4.1.1.15	KEGG:00410+4.1.1.15	KEGG:00430+4.1.1.15	KEGG:00650+4.1.1.15	Gene3D:3.40.640.10	Gene3D:3.90.1150.160
MapMan:4.1.1.1.3.1	EnsemblPlantsGene:Bra006397	EnsemblPlants:Bra006397.1	EnsemblPlants:Bra006397.1-P	GO:GO:0003674	GO:GO:0003824
GO:GO:0004351	GO:GO:0005488	GO:GO:0006536	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016829	GO:GO:0016831	GO:GO:0019752	GO:GO:0030170	InterPro:Glutamate_decarboxylase	InterPro:IPR015421
UniProt:M4CQA8	PFAM:PF00282	PANTHER:PTHR43321	PANTHER:PTHR43321:SF9	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major
InterPro:PyrdxlP-dep_de-COase	SUPFAM:SSF53383	TIGRFAMs:TIGR01788	UniParc:UPI000253FD7A	SEG:seg	:

Description

AT5G17330 (E=1e-274) GAD, GAD1 | GAD; calmodulin binding / glutamate decarboxylase

Coordinates

chrA03:+:3345382..3349188

Molecular Weight (calculated)

57071.5 Da

IEP (calculated)

5.218

GRAVY (calculated)

-0.263

Length

502 amino acids

Sequence
(BLAST)

001: MVLSHAASDS DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMASI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLGETETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PFDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPEQAVEMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVL KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVVW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TGRFNIVSKE EGVPLVAFSL KDSSSHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLEEE KSEANGDNLM VTVKKTDMEK QREIINGWKK FVSDRKKTNG
501: IC

Best Arabidopsis Sequence Match ( AT5G17330.1 )
(BLAST)

001: MVLSHAVSES DVSVHSTFAS RYVRTSLPRF KMPENSIPKE AAYQIINDEL MLDGNPRLNL ASFVTTWMEP ECDKLIMSSI NKNYVDMDEY PVTTELQNRC
101: VNMIAHLFNA PLEEAETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PVDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSEGYYVM DPQQAVDMVD
201: ENTICVAAIL GSTLNGEFED VKLLNDLLVE KNKETGWDTP IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWVIW RNKEDLPEEL
301: IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGHEGY RNVMENCREN MIVLREGLEK TERFNIVSKD EGVPLVAFSL KDSSCHTEFE ISDMLRRYGW
401: IVPAYTMPPN AQHITVLRVV IREDFSRTLA ERLVIDIEKV MRELDELPSR VIHKISLGQE KSESNSDNLM VTVKKSDIDK QRDIITGWKK FVADRKKTSG
501: IC

Arabidopsis Description

GAD1Glutamate decarboxylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42521]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.