Factsheet for Os02t0537500-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016737_P002	Maize	mitochondrion, plastid	75.79	77.25
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	72.21	74.89
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	72.21	74.89
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	72.0	74.67
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	70.32	72.93
Zm00001d050664_P002	Maize	mitochondrion, plastid	58.32	72.89
OQU85083	Sorghum	mitochondrion, plastid	69.05	69.64
Os04t0416100-01	Rice	nucleus	43.37	64.58
GSMUA_Achr5P17430_001	Banana	plastid	26.95	60.38
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	50.11	58.19
Os12t0158800-01	Rice	nucleus	51.16	54.48
VIT_08s0007g02510.t01	Wine grape	plastid	53.05	54.08
GSMUA_Achr6P07100_001	Banana	mitochondrion	53.89	54.01
VIT_06s0080g01110.t01	Wine grape	nucleus	50.11	53.36
KRH25298	Soybean	nucleus	48.63	51.33
KRH30372	Soybean	nucleus	48.84	50.43
PGSC0003DMT400042347	Potato	plastid	50.53	50.21
Solyc01g007760.2.1	Tomato	plastid	50.11	49.69
PGSC0003DMT400015188	Potato	nucleus	46.11	49.44
KRH72218	Soybean	nucleus	48.21	48.93
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	45.89	48.55
KRH32815	Soybean	nucleus	47.16	48.07
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	44.84	47.02
Bra005305.1-P	Field mustard	plastid	47.58	46.99
CDX84164	Canola	plastid	47.58	46.89
Bra017268.1-P	Field mustard	plastid	47.37	46.2
CDX84581	Canola	plastid	45.05	46.12
CDX98588	Canola	nucleus	42.95	46.05
CDX92373	Canola	nucleus	42.95	46.05
Bra023047.1-P	Field mustard	plastid	45.26	45.84
Bra002398.1-P	Field mustard	nucleus	42.74	45.82
CDY43755	Canola	plastid	47.16	45.81
CDX70990	Canola	nucleus	43.16	44.66
Bra006615.1-P	Field mustard	nucleus	42.95	44.06
AT5G22220.2	Thale cress	cytosol	43.16	43.71
CDX88807	Canola	cytosol	43.16	42.44
CDX75078	Canola	plastid	47.58	42.32
CDX79651	Canola	plastid	44.84	41.04
AT2G36010.2	Thale cress	plastid	43.58	40.27
KRH26172	Soybean	nucleus	13.68	34.57
Os04t0112200-00	Rice	nucleus, plastid	34.74	34.38
PGSC0003DMT400013986	Potato	cytosol	6.32	30.61
Solyc06g074010.2.1	Tomato	nucleus	47.16	26.45

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	EntrezGene:4329577	EMBL:AK068689	ProteinID:BAD73815.1
ProteinID:BAF08963.1	ProteinID:BAS79075.1	ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB
InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	EMBL:HQ858830	InterPro:IPR036388	EnsemblPlantsGene:Os02g0537500	EnsemblPlants:Os02t0537500-01
PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF48	UniProt:Q5QL93	SMART:SM01372
SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI000048E082	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_015623378.1
SEG:seg	:	:	:	:	:

Description

E2F transcription factor 1Similar to E2F homolog. (Os02t0537500-01)

Coordinates

chr2:-:19868200..19873307

Molecular Weight (calculated)

50983.7 Da

IEP (calculated)

4.721

GRAVY (calculated)

-0.517

Length

475 amino acids

Sequence
(BLAST)

001: MAGSGRPPAA QKKILQSLRP PLPFAASSRS PFAAPNDYHR FPAGGAAAAA ASGSGGIGAG GAGGGGDIEE GLVIRTPQKR KAPEESDVAE SSDCMITSPG
101: FAVSPMLTPV SGKAVKTSKS KTKNNKAGPQ TPTSNVGSPL NPPTPVGTCR YDSSLGLLTK KFINLLKQAP DGILDLNNAA ETLEVQKRRI YDITNVLEGI
201: GLIEKTLKNR IRWKGLDDSG VELDNGLSAL QAEVENLSLK EQALDERISD MREKLRGLTE DENNQRWLYV TEDDIKGLPC FQNETLIAIK APHGTTLEVP
301: DPDEAGDYLQ RRYRIVLRST MGPIDVYLVS QFDEKFEDLG GGATPSGHAN VPKHQPTEVF NTTNAGVGQC SNSVAVDNNI QHSQTIPQDP SASHDFGGMT
401: RIIPSDIDTD ADYWLISEGD VSITDMWKTA PDVQWDESLD TDVFLSEDVR TPSSHNQQPS AVGGPQMQVS DMHKP

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.