CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30372	Soybean	nucleus	95.11	93.04
VIT_06s0080g01110.t01	Wine grape	nucleus	67.78	68.39
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	62.44	62.58
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	60.89	60.49
PGSC0003DMT400015188	Potato	nucleus	58.44	59.37
GSMUA_Achr5P17430_001	Banana	plastid	27.78	58.96
KRH72218	Soybean	nucleus	58.22	55.98
Os04t0416100-01	Rice	nucleus	39.33	55.49
KRH32815	Soybean	nucleus	57.11	55.15
CDX92373	Canola	nucleus	52.89	53.72
AT5G22220.2	Thale cress	cytosol	55.78	53.52
CDX98588	Canola	nucleus	52.67	53.5
GSMUA_Achr2P20420_001	Banana	nucleus	49.56	53.35
Bra002398.1-P	Field mustard	nucleus	52.44	53.27
GSMUA_Achr6P07100_001	Banana	mitochondrion	56.0	53.16
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.22	53.06
GSMUA_Achr10P...	Banana	nucleus, plastid	51.78	52.95
OQU78759	Sorghum	plastid	44.22	52.65
CDX70990	Canola	nucleus	53.33	52.29
Bra006615.1-P	Field mustard	nucleus	52.67	51.19
Os12t0158800-01	Rice	nucleus	49.33	49.78
TraesCS5B01G125100.1	Wheat	cytosol	49.11	49.77
TraesCS5A01G125900.3	Wheat	cytosol	48.89	49.55
TraesCS5D01G133600.1	Wheat	cytosol	48.67	49.32
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	49.78	48.91
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	49.78	48.91
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	49.78	48.91
Zm00001d050664_P002	Maize	mitochondrion, plastid	41.11	48.68
CDX88807	Canola	cytosol	52.22	48.65
Os02t0537500-01	Rice	mitochondrion	51.33	48.63
Zm00001d023465_P002	Maize	cytosol	48.67	48.13
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	48.67	47.82
Zm00001d016737_P002	Maize	mitochondrion, plastid	47.33	45.71
HORVU5Hr1G040190.4	Barley	plastid	48.67	45.34
OQU81541	Sorghum	nucleus	45.78	45.08
TraesCS2B01G313600.2	Wheat	nucleus	45.56	44.86
TraesCS2A01G297400.1	Wheat	nucleus	45.56	44.76
TraesCS2D01G295300.2	Wheat	mitochondrion	45.33	44.54
Zm00001d003755_P001	Maize	nucleus	36.22	44.41
OQU85083	Sorghum	mitochondrion, plastid	43.78	41.83
KRH61047	Soybean	cytosol, nucleus, plastid	30.44	38.59
KRH26172	Soybean	nucleus	15.56	37.23
HORVU2Hr1G073750.2	Barley	plastid	44.44	36.17
KRH51709	Soybean	nucleus	34.22	36.15
KRH07603	Soybean	cytosol	13.78	32.8
Solyc06g074010.2.1	Tomato	nucleus	58.67	31.17

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100812368	MapMan:13.1.2.2	MapMan:15.5.10	EMBL:ACUP02007229	ncoils:Coil
InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	EnsemblPlantsGene:GLYMA_12G093400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983
UniProt:I1LRK1	InterPro:IPR036388	EnsemblPlants:KRH25298	ProteinID:KRH25298	ProteinID:KRH25298.1	PFAM:PF02319
PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785
UniParc:UPI000233C41F	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:-:7637093..7642402

Molecular Weight (calculated)

49405.9 Da

IEP (calculated)

4.581

GRAVY (calculated)

-0.596

Length

450 amino acids

Sequence
(BLAST)

001: MSASRAPPAA NPPDQIMHSM KRQLPFSSMK PPFVAAGDYH RHDAAEAIVV KTPLLKRKSE VADFEADSGD RMTAGFTEAA NSPFQTPVSG KTGKGGKSSR
101: LTKGNRVGTQ TPGSNIGSPA GSNLTPAGPC RYDSSLGLLT KKFINLIKQA EDGILDLNKA ADTLEVQKRR IYDITNVLEG IGLIEKKLKN RIQWKGLDVS
201: RPGEADDSFA SLQAEVENLT MKERQLDEQI REMQERLRDL SEDENNDKLL FVTEEDIKNL PCFQNETLIA IKAPHGTTLE VPDPDEAVDY LQRRYRIVLR
301: STMGPIDLYL VSQFEEKFEE INGADVAPKL PSSPDVTKQQ STVVPEDRGK HIEVQGQAAP GPSSDFTPSQ DFVSGIMKIV PSDVASEADY WLLSDADVSI
401: TDMWRTEPGV EWNELEPLQE DYCMTDENTT TPSHPSNVGE VSSASKPTGG

Best Arabidopsis Sequence Match ( AT5G22220.2 )
(BLAST)

001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DESGPDWNQM ITFDQDHAGP SDNKILEQPQ TPSSPTPEES TATRSPTGS

Arabidopsis Description

E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.