Factsheet for Solyc06g074010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015188	Potato	nucleus	48.29	92.33
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	38.02	71.71
VIT_06s0080g01110.t01	Wine grape	nucleus	33.29	63.23
KRH30372	Soybean	nucleus	32.11	59.13
KRH25298	Soybean	nucleus	31.17	58.67
GSMUA_Achr5P17430_001	Banana	plastid	13.46	53.77
OQU78759	Sorghum	plastid	23.49	52.65
Solyc01g007760.2.1	Tomato	plastid	29.63	52.4
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	24.68	51.1
CDX98588	Canola	nucleus	26.56	50.79
CDX92373	Canola	nucleus	26.56	50.79
Bra002398.1-P	Field mustard	nucleus	26.56	50.79
GSMUA_Achr2P20420_001	Banana	nucleus	25.03	50.72
AT5G22220.2	Thale cress	cytosol	27.98	50.53
CDX70990	Canola	nucleus	27.04	49.89
GSMUA_Achr10P...	Banana	nucleus, plastid	25.86	49.77
Bra006615.1-P	Field mustard	nucleus	26.92	49.24
TraesCS5B01G125100.1	Wheat	cytosol	25.74	49.1
Os04t0416100-01	Rice	nucleus	18.42	48.9
TraesCS5D01G133600.1	Wheat	cytosol	25.62	48.87
GSMUA_Achr6P07100_001	Banana	mitochondrion	27.27	48.73
TraesCS5A01G125900.3	Wheat	cytosol	25.5	48.65
Zm00001d050664_P002	Maize	mitochondrion, plastid	21.61	48.16
Os12t0158800-01	Rice	nucleus	25.03	47.53
Os02t0537500-01	Rice	mitochondrion	26.45	47.16
CDX88807	Canola	cytosol	26.8	47.0
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	25.03	46.29
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	24.91	46.07
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	24.79	45.85
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	24.79	45.85
Zm00001d016737_P002	Maize	mitochondrion, plastid	24.91	45.28
Zm00001d023465_P002	Maize	cytosol	24.32	45.27
HORVU5Hr1G040190.4	Barley	plastid	25.38	44.51
Zm00001d003755_P001	Maize	nucleus	18.65	43.05
OQU85083	Sorghum	mitochondrion, plastid	23.14	41.61
OQU81541	Sorghum	nucleus	22.43	41.58
TraesCS2B01G313600.2	Wheat	nucleus	21.61	40.04
TraesCS2A01G297400.1	Wheat	nucleus	21.37	39.52
TraesCS2D01G295300.2	Wheat	mitochondrion	21.25	39.3
HORVU2Hr1G073750.2	Barley	plastid	21.37	32.73
Solyc04g081350.2.1	Tomato	plastid	15.11	32.24

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim
InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR036388	UniProt:K4C9B9	PFAM:PF02319
PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785
EnsemblPlantsGene:Solyc06g074010.2	EnsemblPlants:Solyc06g074010.2.1	UniParc:UPI000276619A	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

No Description!

Coordinates

chr6:+:45750323..45761773

Molecular Weight (calculated)

93158.7 Da

IEP (calculated)

4.447

GRAVY (calculated)

-0.552

Length

847 amino acids

Sequence
(BLAST)

001: MQPNQQRPSK RQLPFTSSKP PLGDYHRFST DPLHPSSQEL EGIAVKSTPL KRKSGTINYE QGVGAQVSGC ESVYVSSPML TPISGKAGKS QKEPRASKAR
101: SAAQATSSLG SPSGNNVTPV GPCRYDNSLG LLTKKFINLL KHAKDGILDL NKAADTLEVQ KRRIYDITNV LEGIGLIEKK LKNMIQWKGL DVSRPGEVDE
201: SVTSLQAGVE NLTIEESRLD EQIRKMKERL RDLSGDENNK RWLFVTEDDI KSLPCLQNDT LIAIKAPHGT SLEVPDPDEA VDYPERRYRI VFRSTMGPID
301: VYLVSKFEEK FEEINTVEEP STMPSTSGFI ENETATLPVD DGGGVGVGVL EQENQRECPD AGTSQDFVSG ITKIIPDVDN EADYWLLSDA DVSITDMWTE
401: SALNWNALDA INEDYSIADV STPRAQTPPS STIEVPSGKS TGRSWQFESQ GNELHCTPLK RKSETANHEQ GVGAQIAGCG NANVSSSMQT PISGKAGKSQ
501: KAPKSSAQAT SSLGSHSGNN VTPVGPCCYD NSLGFLTKKF INLIKHSEDG VLDLNKAADT LEVKKRRLYD VTSVLEGIGL IEKKSLNMIQ WEGLDVSRPG
601: DVDESVTSLQ AEVENLTIEE SILDEQIREK QERLRVLSED ENNQRWLFVT EDDIKSLPCL QNYTLIAIRF LHGTSLEVPD PNEAVDYPQR RYSIVIRSTM
701: GPIDVYLISK FEEKFKQITT VEEPSTMPST SGFIEKETAA LPVDDGRGVG VAMEEQENQR ECPDAGTSQN PVSGIIKIVP DFDNQEEDYL FLSDAHVSNT
801: DMWTESVRDA LDSIYEDYSI ADVSSPHAQT PLSSTTELTS ANTTEAE

Best Arabidopsis Sequence Match ( AT5G22220.2 )
(BLAST)

001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DESGPDWNQM ITFDQDHAGP SDNKILEQPQ TPSSPTPEES TATRSPTGS

Arabidopsis Description

E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.