CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016737_P002	Maize	mitochondrion, plastid	82.17	83.05
Os02t0537500-01	Rice	mitochondrion	69.64	69.05
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	63.27	65.07
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	63.06	64.85
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	62.42	64.19
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	62.21	63.97
GSMUA_Achr5P17430_001	Banana	plastid	25.27	56.13
OQU78759	Sorghum	plastid	40.34	50.26
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.52	50.12
GSMUA_Achr6P07100_001	Banana	mitochondrion	48.2	47.89
OQU81541	Sorghum	nucleus	45.86	47.26
VIT_06s0080g01110.t01	Wine grape	nucleus	43.31	45.74
VIT_08s0007g02510.t01	Wine grape	plastid	44.16	44.64
PGSC0003DMT400042347	Potato	plastid	44.8	44.14
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	41.83	43.88
PGSC0003DMT400015188	Potato	nucleus	41.19	43.79
KRH25298	Soybean	nucleus	41.83	43.78
Solyc01g007760.2.1	Tomato	plastid	44.37	43.63
KRH30372	Soybean	nucleus	42.46	43.48
KRH72218	Soybean	nucleus	42.46	42.73
KRH32815	Soybean	nucleus	42.04	42.49
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	40.34	41.94
Bra023047.1-P	Field mustard	plastid	41.4	41.58
CDX92373	Canola	nucleus	39.07	41.53
CDX84581	Canola	plastid	40.76	41.38
CDX98588	Canola	nucleus	38.85	41.31
Bra002398.1-P	Field mustard	nucleus	38.85	41.31
CDX84164	Canola	plastid	42.04	41.08
Bra005305.1-P	Field mustard	plastid	41.4	40.54
CDY43755	Canola	plastid	42.04	40.49
Bra017268.1-P	Field mustard	plastid	41.83	40.45
AT5G22220.2	Thale cress	cytosol	39.92	40.09
CDX70990	Canola	nucleus	38.22	39.22
Bra006615.1-P	Field mustard	nucleus	37.79	38.44
CDX88807	Canola	cytosol	38.0	37.06
CDX75078	Canola	plastid	41.61	36.7
CDX79651	Canola	plastid	39.7	36.03
AT2G36010.2	Thale cress	plastid	38.22	35.02
EES11756	Sorghum	plastid	30.15	28.98
KRH26172	Soybean	nucleus	11.04	27.66
PGSC0003DMT400013986	Potato	cytosol	5.73	27.55
Solyc06g074010.2.1	Tomato	nucleus	41.61	23.14

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	UniProt:A0A1Z5RMW7	InterPro:E2F	InterPro:E2F-DP_heterodim
InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR036388	EnsemblPlants:OQU85083	ProteinID:OQU85083
ProteinID:OQU85083.1	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372
EnsemblPlantsGene:SORBI_3004G168300	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI000B8BAF10	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:51892655..51896519

Molecular Weight (calculated)

52041.5 Da

IEP (calculated)

5.032

GRAVY (calculated)

-0.492

Length

471 amino acids

Sequence
(BLAST)

001: MSGLGSGRPQ AAQKILQSLR PPLSFASPSR PPFAAPDEYH RFPTPAAATG PGATSGGVGV GGDPPDTIEE GLVLRTPLKR KARSVENDTA ESSDCIITSP
101: MLTPVSGKTV KASKAKAKNS KAGPQTPTSN VGSPLNPPTP VGTCRYDSSL GLLTKKFINL LKQAPDGILD LNNAAETLEV QKRRIYDITN VLEGIGLIEK
201: TLKNRIRWKA LDDSSVHLDN GISALQFLTK ALCNQVLCFP FSDMREKLRE LTEDENNKRW IYVTEDDIKG LPSFQNYTLI AIKAPHGTTL EVPDPDEAGD
301: YLQRRYRIVL RSTMGPIDVY LVSQFDENIE ELGDVMPRHQ PTEDFNTTYA AQSSTPIDVA HDVQQSQKIP QDPSTLHDFG GMTRLTASDV QTSDYWLLTE
401: GDVSMTDIWR TERILDNHSL SYLKFLAWKI EEVQWDQMDF LSEDVVTPRA HNQQPVTADG PHMEVPSMDK P

Best Arabidopsis Sequence Match ( AT2G36010.3 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQLQ AEIENLALEE QALDNQIRQT EERLRDLSEN EKNQKWLFVT EEDIKSLPGF
301: QNQTLIAVKA PHGTTLEVPD PDEAADHPQR RYRIILRSTM GPIDVYLVSE FEGKFEDTNG SGAAPPACLP IASSSGSTGH HDIEALTVDN PETAIVSHDH
401: PHPQPGDTSD LNYLQEQVGG MLKITPSDVE NDESDYWLLS NAEISMTDIW KTDSGIDWDY GIADVSTPPP GMGEIAPTAV DSTPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.