Factsheet for VIT_08s0007g02510.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0080g01110.t01	Wine grape	nucleus	68.24	71.3
KRH72218	Soybean	nucleus	68.45	68.16
KRH32815	Soybean	nucleus	66.74	66.74
Solyc01g007760.2.1	Tomato	plastid	67.6	65.76
PGSC0003DMT400042347	Potato	plastid	67.17	65.48
GSMUA_Achr5P17430_001	Banana	plastid	28.33	62.26
GSMUA_Achr6P07100_001	Banana	mitochondrion	61.8	60.76
OQU78759	Sorghum	plastid	48.71	60.05
GSMUA_Achr2P20420_001	Banana	nucleus	53.65	59.81
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	52.15	59.41
TraesCS5B01G125100.1	Wheat	cytosol	55.36	58.11
TraesCS5D01G133600.1	Wheat	cytosol	55.15	57.88
TraesCS5A01G125900.3	Wheat	cytosol	55.15	57.88
Os12t0158800-01	Rice	nucleus	55.36	57.85
GSMUA_Achr10P...	Banana	nucleus, plastid	53.65	56.82
Os04t0416100-01	Rice	nucleus	38.63	56.43
Bra005305.1-P	Field mustard	plastid	58.15	56.34
CDX84581	Canola	plastid	55.79	56.03
CDX84164	Canola	plastid	57.51	55.6
Bra023047.1-P	Field mustard	plastid	55.58	55.22
Bra017268.1-P	Field mustard	plastid	56.65	54.21
CDY43755	Canola	plastid	56.44	53.78
Zm00001d050664_P002	Maize	mitochondrion, plastid	43.56	53.42
Zm00001d023465_P002	Maize	cytosol	52.15	53.41
Os02t0537500-01	Rice	mitochondrion	54.08	53.05
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	51.5	52.4
HORVU5Hr1G040190.4	Barley	plastid	54.29	52.38
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	51.29	52.18
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	51.07	51.97
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	50.86	51.75
CDX75078	Canola	plastid	58.37	50.94
Zm00001d016737_P002	Maize	mitochondrion, plastid	49.79	49.79
AT2G36010.2	Thale cress	plastid	53.22	48.25
OQU81541	Sorghum	nucleus	46.78	47.7
TraesCS2A01G297400.1	Wheat	nucleus	46.78	47.6
CDX79651	Canola	plastid	53.0	47.59
TraesCS2B01G313600.2	Wheat	nucleus	46.57	47.48
TraesCS2D01G295300.2	Wheat	mitochondrion	46.14	46.94
Zm00001d003755_P001	Maize	nucleus	36.27	46.05
OQU85083	Sorghum	mitochondrion, plastid	44.64	44.16
VIT_18s0001g14110.t01	Wine grape	nucleus	40.13	41.65
HORVU2Hr1G073750.2	Barley	plastid	45.28	38.16

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100249486	wikigene:100249486	MapMan:13.1.2.2	MapMan:15.5.10	EMBL:AM443534
ProteinID:CAN67410	ProteinID:CAN67410.1	ProteinID:CBI30368	ProteinID:CBI30368.3	ncoils:Coil	UniProt:D7TH52
InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	EMBL:FN595991	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983
InterPro:IPR036388	EntrezGene:LOC100249486	wikigene:LOC100249486	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081
PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI0001983EEF	ArrayExpress:VIT_08s0007g02510
EnsemblPlantsGene:VIT_08s0007g02510	EnsemblPlants:VIT_08s0007g02510.t01	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002275458	RefSeq:XP_002275458.2
RefSeq:XP_010654143.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:+:16621527..16626939

Molecular Weight (calculated)

51282.1 Da

IEP (calculated)

4.654

GRAVY (calculated)

-0.604

Length

466 amino acids

Sequence
(BLAST)

001: MSGPRAPTRS APPPPSSGQI LRPMKRHLPF TSTKPPFVPP DDYHRFSSAD AHGVANHEPE GIVVKSPQLK RKSAMDDNEV GSSEWTASPG YADAGNSPFR
101: TPVSGKGGRI YSKSKVSKGN VCGPQTPVSN AGSPSTLTPA GNCRYDSSLG LLTKKFINLI KHAEDGILDL NKAAETLEVQ KRRIYDITNV LEGIGLIEKK
201: LKNRIRWKGL DVSRPGEVDD DVTILQAEVE NLSLEERRLD DHIREMQEKL RDLSEDENNQ KWLFVTEDDI KGLPCFQNET LIAIKAPHGT TLEVPDPDEA
301: VDYPQRRYRI VLRSTMGPID VYLVSQFEEK FEEMNGTPPP LSFPLASSSG SNENPSTEVV IADSSGKELE PQDGYQMCSD LTASQEFIGG IMKIVPDVDS
401: DADYWLRSDA EVSITDMWKT DSYVEWNGVD MLNAEFGMAD VSTPLPQTPP SGLTEGPSTA VNPTHR

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.