CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003755_P001	Maize	nucleus	56.02	69.75
Os04t0416100-01	Rice	nucleus	42.67	61.13
TraesCS2B01G313600.2	Wheat	nucleus	53.17	53.17
TraesCS2A01G297400.1	Wheat	nucleus	52.74	52.62
TraesCS2D01G295300.2	Wheat	mitochondrion	51.86	51.75
GSMUA_Achr5P17430_001	Banana	plastid	23.85	51.42
VIT_08s0007g02510.t01	Wine grape	plastid	47.7	46.78
VIT_06s0080g01110.t01	Wine grape	nucleus	45.51	46.64
OQU85083	Sorghum	mitochondrion, plastid	47.26	45.86
KRH25298	Soybean	nucleus	45.08	45.78
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	40.92	45.72
OQU78759	Sorghum	plastid	37.64	45.5
KRH30372	Soybean	nucleus	45.08	44.78
GSMUA_Achr6P07100_001	Banana	mitochondrion	45.73	44.09
PGSC0003DMT400015188	Potato	nucleus	42.45	43.79
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	42.23	42.98
Solyc01g007760.2.1	Tomato	plastid	44.42	42.38
PGSC0003DMT400042347	Potato	plastid	44.2	42.26
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	41.79	42.16
KRH72218	Soybean	nucleus	43.11	42.09
HORVU2Hr1G073750.2	Barley	plastid	49.89	41.23
KRH32815	Soybean	nucleus	42.01	41.2
CDX84581	Canola	plastid	40.48	39.87
Bra023047.1-P	Field mustard	plastid	40.7	39.66
CDX98588	Canola	nucleus	37.86	39.05
CDY43755	Canola	plastid	41.58	38.85
CDX92373	Canola	nucleus	37.64	38.83
Bra017268.1-P	Field mustard	plastid	41.36	38.81
Bra002398.1-P	Field mustard	nucleus	37.42	38.6
AT5G22220.2	Thale cress	cytosol	39.61	38.59
Bra005305.1-P	Field mustard	plastid	40.48	38.46
CDX84164	Canola	plastid	40.48	38.38
CDX70990	Canola	nucleus	37.2	37.04
Bra006615.1-P	Field mustard	nucleus	37.2	36.72
CDX88807	Canola	cytosol	37.2	35.2
CDX79651	Canola	plastid	39.61	34.87
CDX75078	Canola	plastid	40.7	34.83
AT2G36010.2	Thale cress	plastid	37.42	33.27
KRH26172	Soybean	nucleus	12.25	29.79
EES11756	Sorghum	plastid	30.63	28.57
PGSC0003DMT400013986	Potato	cytosol	5.69	26.53
Solyc06g074010.2.1	Tomato	nucleus	41.58	22.43

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	UniProt:A0A1Z5RDH0	ncoils:Coil	InterPro:E2F
InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR036388	EnsemblPlants:OQU81541
ProteinID:OQU81541	ProteinID:OQU81541.1	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF45
SMART:SM01372	EnsemblPlantsGene:SORBI_3006G074600	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI000B42599A	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:43673015..43677393

Molecular Weight (calculated)

49964.2 Da

IEP (calculated)

5.813

GRAVY (calculated)

-0.575

Length

457 amino acids

Sequence
(BLAST)

001: MSEGARPAAA ARQIVKSLQR CGRLSLERPP FGAALGDYHQ FPRPSPSPAA AAAAAATPGG REEFDEGIVI RTPIKRKAPY GECDTAESTG LSMASSGFIQ
101: GVGSPRMTPI SGNTARKYKS SKSEYTKAGP QTPTLNAAGS PGNPPTPAGT CRYDSSLALL TKKFINLLKE AEDGILDLNS TAKTLGVKKR RIYDITNVLE
201: GSGLIEKKLK NRICWKGLDK LGPNLDDDLS VLKTDFGNLN LQEQALDEHI SKIQEKLKDL TEDESNKGWL FHTEDDIMGV RCFQNQTLIA IKAPQGSSLE
301: VPNPDVMIGD SLQRRYRLVI RSTMGPIDLY LVSKTEEKME GKLGDAAEPA GHTDVAKHGS IERPSAKRAW ERSRKEEVAL KAQKTQKTPD LNPPCHSEGV
401: LRRINPSDVD SGADYLLLTD YDVSITDMWR TEEMQLDEID PNDFLAEVVS SPETLEQ

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.