CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017268.1-P	Field mustard	plastid	97.75	98.15
CDX84581	Canola	plastid	75.87	79.96
CDX84164	Canola	plastid	78.73	79.88
CDX75078	Canola	plastid	78.94	72.28
CDX79651	Canola	plastid	73.62	69.36
AT2G36010.2	Thale cress	plastid	64.83	61.67
VIT_08s0007g02510.t01	Wine grape	plastid	53.78	56.44
GSMUA_Achr5P17430_001	Banana	plastid	23.93	55.19
KRH72218	Soybean	nucleus	52.35	54.7
KRH32815	Soybean	nucleus	51.53	54.08
Solyc01g007760.2.1	Tomato	plastid	51.94	53.03
PGSC0003DMT400042347	Potato	plastid	51.74	52.93
Os04t0416100-01	Rice	nucleus	34.36	52.66
OQU78759	Sorghum	plastid	40.08	51.85
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	41.51	49.63
Zm00001d050664_P002	Maize	mitochondrion, plastid	37.63	48.42
GSMUA_Achr2P20420_001	Banana	nucleus	41.31	48.33
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	44.99	48.03
TraesCS5D01G133600.1	Wheat	cytosol	43.56	47.97
TraesCS5B01G125100.1	Wheat	cytosol	43.56	47.97
TraesCS5A01G125900.3	Wheat	cytosol	43.56	47.97
GSMUA_Achr6P07100_001	Banana	mitochondrion	46.42	47.89
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	44.79	47.82
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	44.79	47.82
Os12t0158800-01	Rice	nucleus	43.35	47.53
Os02t0537500-01	Rice	mitochondrion	45.81	47.16
GSMUA_Achr10P...	Banana	nucleus, plastid	42.33	47.05
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	43.97	46.94
CDX98588	Canola	nucleus	42.33	46.73
Zm00001d023465_P002	Maize	cytosol	43.15	46.37
CDX92373	Canola	nucleus	41.92	46.28
Zm00001d016737_P002	Maize	mitochondrion, plastid	43.56	45.71
TraesCS2B01G313600.2	Wheat	nucleus	41.51	44.42
TraesCS2A01G297400.1	Wheat	nucleus	41.51	44.32
HORVU5Hr1G040190.4	Barley	plastid	43.76	44.31
CDX70990	Canola	nucleus	41.31	44.01
TraesCS2D01G295300.2	Wheat	mitochondrion	40.49	43.23
CDX88807	Canola	cytosol	42.13	42.65
OQU85083	Sorghum	mitochondrion, plastid	40.49	42.04
Zm00001d003755_P001	Maize	nucleus	31.29	41.69
OQU81541	Sorghum	nucleus	38.85	41.58
CDY16998	Canola	nucleus	29.65	39.51
CDY17797	Canola	nucleus	29.24	37.93
HORVU2Hr1G073750.2	Barley	plastid	39.26	34.72

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	GO:A0A078HYU5	UniProt:A0A078HYU5	EnsemblPlants:CDY43755
ProteinID:CDY43755	ProteinID:CDY43755.1	ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB
InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00077252001	InterPro:IPR036388	PFAM:PF02319	PFAM:PF16421
PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI0004EF2B5E
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

BnaAnng07700DBnaAnng07700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYU5]

Coordinates

chrLK032567:-:247321..250976

Molecular Weight (calculated)

53134.8 Da

IEP (calculated)

4.611

GRAVY (calculated)

-0.592

Length

489 amino acids

Sequence
(BLAST)

001: MSGGARSSPG PSQPPPPHHP PSSPSPSSSL PVVPPIRRNL AFASTKPPFS PSDYHRFAPS HLTDNDKSLV NVCELVDRED DDVVVHRSPS RKRKTTTDVV
101: AATSDSNGLT SSGFSTLSNS PCKTPVSAKG GRVNTKSKAK GSQSIPQTPI SNAVVGSPAT LTPSGSCRYD SSLGLLTRKF VNLIKQAKDG MLDLNKAAET
201: LEVQKRRIYD ITNVLEGIDL IEKPFKNQIL WKGLDTSGPG DVDADVSVLQ AEIENFSLEE QALDNEIRET EERLRELSEN EKNQKWLFVT EEDIKSLPGF
301: QNQTLIAVKA PHGTTLEVPD PDEAVDIPQR RYRIILRSTM GPIDVYLVSE FEKKFEDTNG TATPPPPACL PIASCSGSSE NHEIEALTVD NKGTANEHQA
401: SQDHAHAQPG DTSDLNHLQE QVGGMLKITP SDVENDDTDY WLLSNADISM TDIWKTDSGI DWDYEIADVS TPPPVMGEIA PTGIDSTPR

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.