Factsheet for Zm00001d023465_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU78759	Sorghum	plastid	74.95	90.21
TraesCS5A01G125900.3	Wheat	cytosol	78.24	80.18
Os12t0158800-01	Rice	nucleus	78.46	80.04
TraesCS5B01G125100.1	Wheat	cytosol	77.8	79.73
TraesCS5D01G133600.1	Wheat	cytosol	77.8	79.73
HORVU5Hr1G040190.4	Barley	plastid	78.24	73.71
GSMUA_Achr5P17430_001	Banana	plastid	27.25	58.49
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.35	53.79
GSMUA_Achr6P07100_001	Banana	mitochondrion	54.51	52.32
VIT_08s0007g02510.t01	Wine grape	plastid	53.41	52.15
VIT_06s0080g01110.t01	Wine grape	nucleus	50.55	51.57
PGSC0003DMT400042347	Potato	plastid	54.07	51.46
Solyc01g007760.2.1	Tomato	plastid	53.85	51.15
KRH72218	Soybean	nucleus	52.09	50.64
Zm00001d050664_P002	Maize	mitochondrion, plastid	41.32	49.47
KRH32815	Soybean	nucleus	50.55	49.36
KRH30372	Soybean	nucleus	49.23	48.7
KRH25298	Soybean	nucleus	48.13	48.67
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	47.25	47.88
PGSC0003DMT400015188	Potato	nucleus	45.71	46.95
Zm00001d016737_P002	Maize	mitochondrion, plastid	47.91	46.78
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	45.71	45.92
CDX84581	Canola	plastid	45.27	44.4
Bra023047.1-P	Field mustard	plastid	45.27	43.92
CDX84164	Canola	plastid	46.15	43.57
Bra017268.1-P	Field mustard	plastid	46.59	43.53
Bra005305.1-P	Field mustard	plastid	45.71	43.24
CDY43755	Canola	plastid	46.37	43.15
CDX98588	Canola	nucleus	41.1	42.21
Bra002398.1-P	Field mustard	nucleus	41.1	42.21
CDX92373	Canola	nucleus	41.1	42.21
Zm00001d003755_P001	Maize	nucleus	33.63	41.69
CDX70990	Canola	nucleus	41.76	41.39
AT5G22220.2	Thale cress	cytosol	41.98	40.72
Bra006615.1-P	Field mustard	nucleus	41.1	40.39
CDX75078	Canola	plastid	46.15	39.33
CDX79651	Canola	plastid	44.18	38.73
CDX88807	Canola	cytosol	41.1	38.72
AT2G36010.2	Thale cress	plastid	40.88	36.19
PGSC0003DMT400013986	Potato	cytosol	7.69	35.71
KRH26172	Soybean	nucleus	12.31	29.79
Zm00001d004512_P001	Maize	plastid	30.55	29.7
Solyc06g074010.2.1	Tomato	nucleus	45.27	24.32

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	UniProt:A0A1D6ITE9	ProteinID:AQK39346.1	ncoils:Coil
InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR036388
PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF48	SMART:SM01372	SUPFAM:SSF144074
SUPFAM:SSF46785	UniParc:UPI0008428BE7	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d023465	EnsemblPlants:Zm00001d023465_P002
EnsemblPlants:Zm00001d023465_T002	SEG:seg	:	:	:	:

Description

E2F-DP-transcription factor 211Transcription factor E2FB

Coordinates

chr10:-:6427340..6432014

Molecular Weight (calculated)

49668.3 Da

IEP (calculated)

4.462

GRAVY (calculated)

-0.592

Length

455 amino acids

Sequence
(BLAST)

001: MAAAAGDGAG EARARALLQQ HRPFATPPGE YHHFGAPSAA ADEMVEAVVL RTPLKRKHND RTENEAAESN DWMSPGYANA GSSPVPTPPS GKGLKASTKP
101: KATKGQKSGP QTPLGFGSPG NPSTPVGGCR YDSSLGLLTK KFLNLLKGAP GGIVDLNNAA ETLEVQKRRI YDITNVLEGI GLIEKKLKNN IRWKGVDDSR
201: PGEVSDDMSI LQADIDALTL QERNLDERIS EMRDRLRGLT EDENNQKWLY VTEEDIKSLP CFQNQTLIAI KAPHGTTLEV PDPDEVNDYP QRRYRIVLRS
301: TMECTSPTCL PNIVLLVDHS QFEEMSGMET PPRPTQTISM DSLENPRTPL AADCNKVTGM ESNIHGGLIL PSDAPSSSQD ISGMMKIVPS ELDADTDYWL
401: LSDNTGVSMT NMWETGPDEW DGIEKFNAED FLEVGTPQQQ DKPADVVDDD PSCII

Best Arabidopsis Sequence Match ( AT5G22220.2 )
(BLAST)

001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DESGPDWNQM ITFDQDHAGP SDNKILEQPQ TPSSPTPEES TATRSPTGS

Arabidopsis Description

E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.