Factsheet for GSMUA_Achr6P07100_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P17430_001	Banana	plastid	32.49	72.64
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.7	69.19
GSMUA_Achr2P20420_001	Banana	nucleus	56.75	64.35
VIT_08s0007g02510.t01	Wine grape	plastid	60.76	61.8
GSMUA_Achr10P...	Banana	nucleus, plastid	56.96	61.36
OQU78759	Sorghum	plastid	48.52	60.85
VIT_06s0080g01110.t01	Wine grape	nucleus	57.17	60.76
Os12t0158800-01	Rice	nucleus	55.91	59.42
Os04t0416100-01	Rice	nucleus	39.24	58.31
TraesCS5D01G133600.1	Wheat	cytosol	54.22	57.88
TraesCS5B01G125100.1	Wheat	cytosol	54.22	57.88
TraesCS5A01G125900.3	Wheat	cytosol	54.22	57.88
KRH72218	Soybean	nucleus	56.33	57.05
KRH32815	Soybean	nucleus	55.91	56.87
KRH30372	Soybean	nucleus	54.85	56.52
KRH25298	Soybean	nucleus	53.16	56.0
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	52.95	55.9
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	53.8	55.68
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	53.38	55.24
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	53.16	55.02
PGSC0003DMT400042347	Potato	plastid	55.49	55.02
Solyc01g007760.2.1	Tomato	plastid	55.27	54.7
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	52.74	54.59
Zm00001d023465_P002	Maize	cytosol	52.32	54.51
Os02t0537500-01	Rice	mitochondrion	54.01	53.89
Zm00001d050664_P002	Maize	mitochondrion, plastid	43.04	53.68
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	50.84	53.2
PGSC0003DMT400015188	Potato	nucleus	49.37	52.82
Zm00001d016737_P002	Maize	mitochondrion, plastid	51.9	52.79
HORVU5Hr1G040190.4	Barley	plastid	53.59	52.59
TraesCS2B01G313600.2	Wheat	nucleus	48.31	50.11
TraesCS2D01G295300.2	Wheat	mitochondrion	48.31	50.0
TraesCS2A01G297400.1	Wheat	nucleus	48.31	50.0
OQU85083	Sorghum	mitochondrion, plastid	47.89	48.2
CDX98588	Canola	nucleus	44.3	47.4
CDX92373	Canola	nucleus	44.3	47.4
CDX70990	Canola	nucleus	45.78	47.28
CDX84581	Canola	plastid	46.2	47.2
Bra002398.1-P	Field mustard	nucleus	44.09	47.18
Bra023047.1-P	Field mustard	plastid	46.62	47.12
AT5G22220.2	Thale cress	cytosol	46.62	47.12
Bra017268.1-P	Field mustard	plastid	48.31	47.02
Zm00001d003755_P001	Maize	nucleus	36.08	46.59
CDX84164	Canola	plastid	47.26	46.47
CDY43755	Canola	plastid	47.89	46.42
Bra005305.1-P	Field mustard	plastid	47.05	46.36
OQU81541	Sorghum	nucleus	44.09	45.73
Bra006615.1-P	Field mustard	nucleus	44.09	45.14
CDX88807	Canola	cytosol	44.51	43.69
CDX75078	Canola	plastid	47.26	41.95
CDX79651	Canola	plastid	45.57	41.62
AT2G36010.2	Thale cress	plastid	44.94	41.44
HORVU2Hr1G073750.2	Barley	plastid	45.99	39.42
GSMUA_Achr4P17950_001	Banana	nucleus	32.49	38.12
KRH26172	Soybean	nucleus	14.98	37.77
PGSC0003DMT400013986	Potato	cytosol	6.54	31.63
Solyc06g074010.2.1	Tomato	nucleus	48.73	27.27

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB
InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr6G07100_001	EnsemblPlants:GSMUA_Achr6P07100_001	EnsemblPlants:GSMUA_Achr6T07100_001	InterPro:IPR036388
UniProt:M0T4V9	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372
SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI0002964CAC	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:

Description

E2F family transcription factor protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G07100_001]

Coordinates

chr6:-:4789519..4795189

Molecular Weight (calculated)

52156.2 Da

IEP (calculated)

4.930

GRAVY (calculated)

-0.623

Length

474 amino acids

Sequence
(BLAST)

001: MSGGRAAGIR APQPTGQIRQ PPKRHLPFPS TRPPFLAPDE YHRFPGPDGR GIAGDETADA LVIKTPVSFL RKREHEDNEA GESSEWMASP GYAEGLNNLL
101: LTPVSGKGGK TYGRSKIAKY NKSGPHTPMS NAGSPSGNTL TPVGTCRYDS SLGLLTKKFI NLLKHAHDGI LDLNNAAETL GVQKRRIYDI TNVLEGIGLI
201: EKKLKNKIRW KGQDNTRPGE VDDDLSVLQA EVEKLALQEH SLDDRISEMR EKLGVLSEDV NNQKWLYMTE DDIKSLPCFQ NETLIAIKAP HGTTLEVPDP
301: DEAGDYLQRR YRIVLRSTMG PIDVYLVSQF EEKFEEVSGV VTPPKLHSGK SMANPETLGN PTLAVATEES KEKELQVNNQ DSQRGFPDVN SLQDFGSGMM
401: KIVPSDVDTD ADYWLLSDSG FSITDMWKTA PEVQWDGIDV FNTDDFVTGS ASTYQPQTPS SVTDVPSNAN STPR

Best Arabidopsis Sequence Match ( AT5G22220.3 )
(BLAST)

001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DEYWNQMITF DQDHAGPSDN KILEQPQTPS SPTPEESTAT RSPTGS

Arabidopsis Description

E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.