CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023465_P002	Maize	cytosol	90.21	74.95
TraesCS5A01G125900.3	Wheat	cytosol	82.01	69.82
TraesCS5D01G133600.1	Wheat	cytosol	81.48	69.37
TraesCS5B01G125100.1	Wheat	cytosol	81.48	69.37
Os12t0158800-01	Rice	nucleus	81.75	69.28
HORVU5Hr1G040190.4	Barley	plastid	81.75	63.98
GSMUA_Achr5P17430_001	Banana	plastid	32.8	58.49
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	58.47	54.03
VIT_08s0007g02510.t01	Wine grape	plastid	60.05	48.71
GSMUA_Achr6P07100_001	Banana	mitochondrion	60.85	48.52
VIT_06s0080g01110.t01	Wine grape	nucleus	56.61	47.98
PGSC0003DMT400015188	Potato	nucleus	52.91	45.15
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	53.44	44.99
PGSC0003DMT400042347	Potato	plastid	56.88	44.98
Solyc01g007760.2.1	Tomato	plastid	56.88	44.89
KRH72218	Soybean	nucleus	54.76	44.23
KRH25298	Soybean	nucleus	52.65	44.22
KRH30372	Soybean	nucleus	53.7	44.13
KRH32815	Soybean	nucleus	53.97	43.78
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	52.38	43.71
CDX84581	Canola	plastid	50.79	41.38
CDX84164	Canola	plastid	52.65	41.29
Bra005305.1-P	Field mustard	plastid	52.12	40.96
Bra023047.1-P	Field mustard	plastid	50.79	40.94
OQU85083	Sorghum	mitochondrion, plastid	50.26	40.34
CDY43755	Canola	plastid	51.85	40.08
Bra017268.1-P	Field mustard	plastid	51.59	40.04
CDX98588	Canola	nucleus	45.77	39.05
CDX92373	Canola	nucleus	45.77	39.05
Bra002398.1-P	Field mustard	nucleus	45.77	39.05
CDX70990	Canola	nucleus	46.83	38.56
Bra006615.1-P	Field mustard	nucleus	46.56	38.01
OQU81541	Sorghum	nucleus	45.5	37.64
AT5G22220.2	Thale cress	cytosol	46.56	37.53
CDX75078	Canola	plastid	52.38	37.08
CDX79651	Canola	plastid	50.53	36.8
CDX88807	Canola	cytosol	46.3	36.23
PGSC0003DMT400013986	Potato	cytosol	8.73	33.67
AT2G36010.2	Thale cress	plastid	45.24	33.27
KRH26172	Soybean	nucleus	15.08	30.32
EES11756	Sorghum	plastid	35.19	27.14
Solyc06g074010.2.1	Tomato	nucleus	52.65	23.49

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	EntrezGene:8079845	UniProt:A0A1Z5R5C3	ncoils:Coil
InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR036388
EnsemblPlants:OQU78759	ProteinID:OQU78759	ProteinID:OQU78759.1	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081
PANTHER:PTHR12081:SF48	SMART:SM01372	EnsemblPlantsGene:SORBI_3008G042700	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI000B8BB154
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:4179391..4183704

Molecular Weight (calculated)

41412.1 Da

IEP (calculated)

4.455

GRAVY (calculated)

-0.535

Length

378 amino acids

Sequence
(BLAST)

001: MMSPGYANAG SSPVPTTPSG KGLKTSAKPK AMKGQKSCPQ TPFSVGSPGN PSTPVGGCRY DSSLGLLTKK FLNLLKGAPG GIVDLNNAAE TLEVQKRRIY
101: DITNVLEGIG LIEKKLKNNI RWKGVDDSRP GEVSDDMSIL QADINALALQ ERNLDERISE MRDRLRALTE DENNQKWLYV TEDDIKSLPC FQNQTLIAIK
201: APHGTTLEVP DPDEVNGYPQ RRYRIVLRST MGPIDVYLVS QFEEMSGMET PPRPTQTISM DSIENPRTPL AADCNKVTGM KLNIQEGLIL PSDAPSTSQD
301: ISGMMKLVPS ELDADTDYWL LSDNAGVSMT NMWETGPEDV EWDRIQKFNA EDFLEVGTPQ QQDKPADVMD GGGPSCVS

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.