Factsheet for VIT_06s0080g01110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g02510.t01	Wine grape	plastid	71.3	68.24
KRH25298	Soybean	nucleus	68.39	67.78
KRH30372	Soybean	nucleus	69.06	66.96
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	65.92	65.48
PGSC0003DMT400015188	Potato	nucleus	63.23	63.66
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	61.88	60.93
GSMUA_Achr5P17430_001	Banana	plastid	28.03	58.96
GSMUA_Achr2P20420_001	Banana	nucleus	54.04	57.66
GSMUA_Achr6P07100_001	Banana	mitochondrion	60.76	57.17
OQU78759	Sorghum	plastid	47.98	56.61
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	51.79	56.48
Os04t0416100-01	Rice	nucleus	39.69	55.49
CDX92373	Canola	nucleus	54.04	54.4
CDX98588	Canola	nucleus	53.81	54.18
Bra002398.1-P	Field mustard	nucleus	53.59	53.95
CDX70990	Canola	nucleus	55.38	53.81
GSMUA_Achr10P...	Banana	nucleus, plastid	52.91	53.64
Os12t0158800-01	Rice	nucleus	53.59	53.59
TraesCS5B01G125100.1	Wheat	cytosol	52.91	53.15
TraesCS5D01G133600.1	Wheat	cytosol	52.69	52.93
TraesCS5A01G125900.3	Wheat	cytosol	52.69	52.93
Bra006615.1-P	Field mustard	nucleus	54.93	52.92
AT5G22220.2	Thale cress	cytosol	54.93	52.24
CDX88807	Canola	cytosol	54.93	50.72
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	52.02	50.66
Zm00001d023465_P002	Maize	cytosol	51.57	50.55
Zm00001d050664_P002	Maize	mitochondrion, plastid	43.05	50.53
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	51.79	50.44
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	51.79	50.44
Os02t0537500-01	Rice	mitochondrion	53.36	50.11
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	51.12	49.78
Zm00001d016737_P002	Maize	mitochondrion, plastid	50.67	48.5
HORVU5Hr1G040190.4	Barley	plastid	52.02	48.03
TraesCS2B01G313600.2	Wheat	nucleus	47.31	46.17
TraesCS2A01G297400.1	Wheat	nucleus	47.31	46.07
TraesCS2D01G295300.2	Wheat	mitochondrion	46.86	45.63
OQU81541	Sorghum	nucleus	46.64	45.51
Zm00001d003755_P001	Maize	nucleus	36.1	43.87
OQU85083	Sorghum	mitochondrion, plastid	45.74	43.31
VIT_18s0001g14110.t01	Wine grape	nucleus	39.91	39.64
HORVU2Hr1G073750.2	Barley	plastid	46.41	37.43
Solyc06g074010.2.1	Tomato	nucleus	63.23	33.29

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100245057	wikigene:100245057	MapMan:13.1.2.2	MapMan:15.5.10	ProteinID:CBI28269
ProteinID:CBI28269.3	ncoils:Coil	UniProt:D7TCP6	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB
InterPro:E2F_WHTH_DNA-bd_dom	EMBL:FN595757	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR036388	EntrezGene:LOC100245057	wikigene:LOC100245057
PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074
SUPFAM:SSF46785	UniParc:UPI0001BE33B9	ArrayExpress:VIT_06s0080g01110	EnsemblPlantsGene:VIT_06s0080g01110	EnsemblPlants:VIT_06s0080g01110.t01	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	RefSeq:XP_002272473	RefSeq:XP_002272473.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:21269866..21279608

Molecular Weight (calculated)

49474.7 Da

IEP (calculated)

4.532

GRAVY (calculated)

-0.677

Length

446 amino acids

Sequence
(BLAST)

001: MHPPKRHLPF PPARPPFVPS PGDYHRFSSS GRVPDHEADE AVVVKSPQLK RKSEPDYEAE SSEWTAVPGF TEVVNSPVQT PVSGKGGKAQ KTSRITKCSR
101: SGPQTPVSNA GSPGNNLTPV GPCRYDSSLG LLTKKFINLI KHAEDGILDL NKAADTLEVQ KRRIYDITNV LEGIGLIEKK LKNRIQWKGL DVSRPGEVDE
201: NVTSLQEEVE NLSIQERRLD AQIRDMQERL RDLSEDENNQ KWLFVTEEDI KGLPCFQKET LIAIKAPHGT TLEVPDPDEA VDYPQRRYRI VLRSSMGPID
301: VYLVSQFEEK FEEINGLEAP PSFPSSSGYN EDPTAAMVTE ESRGKEIEIQ GQDAHRMSSD LNASQDFVSG IMKIVPSDVD SDADYWLLSD ADVSITDMWR
401: TEPGVEWNEL DALNDDYAMA NVSTPQPQTP PSSAAEVPPA ANTPGR

Best Arabidopsis Sequence Match ( AT5G22220.2 )
(BLAST)

001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DESGPDWNQM ITFDQDHAGP SDNKILEQPQ TPSSPTPEES TATRSPTGS

Arabidopsis Description

E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.