Factsheet for Bra006615.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88807	Canola	cytosol	98.06	94.0
Bra002398.1-P	Field mustard	nucleus	81.64	85.33
AT5G22220.2	Thale cress	cytosol	78.4	77.4
VIT_06s0080g01110.t01	Wine grape	nucleus	52.92	54.93
KRH25298	Soybean	nucleus	51.19	52.67
KRH30372	Soybean	nucleus	52.05	52.39
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	50.76	52.34
PGSC0003DMT400015188	Potato	nucleus	49.68	51.92
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	49.24	50.33
GSMUA_Achr5P17430_001	Banana	plastid	22.68	49.53
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	42.98	48.66
Os04t0416100-01	Rice	nucleus	33.48	48.59
OQU78759	Sorghum	plastid	38.01	46.56
GSMUA_Achr10P...	Banana	nucleus, plastid	43.41	45.68
GSMUA_Achr2P20420_001	Banana	nucleus	40.82	45.22
Bra023047.1-P	Field mustard	plastid	44.71	44.14
GSMUA_Achr6P07100_001	Banana	mitochondrion	45.14	44.09
Zm00001d050664_P002	Maize	mitochondrion, plastid	36.07	43.95
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	43.41	43.89
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	43.41	43.89
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	43.2	43.67
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	43.2	43.67
Os12t0158800-01	Rice	nucleus	41.9	43.5
Bra005305.1-P	Field mustard	plastid	45.14	43.45
Os02t0537500-01	Rice	mitochondrion	44.06	42.95
Bra017268.1-P	Field mustard	plastid	45.14	42.92
TraesCS5A01G125900.3	Wheat	cytosol	40.82	42.57
TraesCS5B01G125100.1	Wheat	cytosol	40.82	42.57
TraesCS5D01G133600.1	Wheat	cytosol	40.6	42.34
Zm00001d016737_P002	Maize	mitochondrion, plastid	42.33	42.06
Zm00001d023465_P002	Maize	cytosol	40.39	41.1
TraesCS2D01G295300.2	Wheat	mitochondrion	38.88	39.3
TraesCS2B01G313600.2	Wheat	nucleus	38.44	38.95
TraesCS2A01G297400.1	Wheat	nucleus	38.44	38.86
HORVU5Hr1G040190.4	Barley	plastid	40.39	38.72
Zm00001d003755_P001	Maize	nucleus	30.67	38.69
Bra014096.1-P	Field mustard	nucleus	30.24	38.15
OQU85083	Sorghum	mitochondrion, plastid	38.44	37.79
OQU81541	Sorghum	nucleus	36.72	37.2
HORVU2Hr1G073750.2	Barley	plastid	38.66	32.37
Solyc06g074010.2.1	Tomato	nucleus	49.24	26.92

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	EnsemblPlantsGene:Bra006615	EnsemblPlants:Bra006615.1	EnsemblPlants:Bra006615.1-P
ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983
InterPro:IPR036388	UniProt:M4CQX4	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72
SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI00025400D4	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT5G22220 (E=7e-192) E2F1, E2FB, ATE2FB | E2F1; DNA binding / protein binding / transcription factor

Coordinates

chrA03:+:4285741..4289221

Molecular Weight (calculated)

51361.8 Da

IEP (calculated)

4.585

GRAVY (calculated)

-0.766

Length

463 amino acids

Sequence
(BLAST)

001: MSDSQQEPEQ HPPPKRQHHP SAASMKPPLV APGDYHRFES AESRGGPDQV SEAIVIKSSL TDMVNQIYEP GEMKTGVLQT AVTGKGGKAK KSSRSVKFNK
101: TGIQAFGFNA GSPGNNFAQA GSCRYDSSLG LLTKKFINLI KQAEDGILDL NKAADTLEVQ KRRIYDITNV LEGIGLIEKT LKNRIQWKGL DVSKPGETME
201: NIANLQDEIQ NLSAEEAKLD NQIRESQERL TSLSEDENNK RFLFVSEDDI KNLPCFQNKT LIAVKAPHGT TLEVPDPDEA GGYPQRRYRI IMRSTMGPID
301: VYLVSQFEER FEDIPNVDEP SNVPSTSGVP ENQDVAVPME DSKDKNIETQ EVDDTQRVHS DIESHEFVDG IMKIVPPDLD MDVDYWLRSE VGEVSITDMW
401: PNESGPNWNS QMLSFHQGAG PNWNHQMVSY DQGAGPSNTT QEQPQSPSGP KPEQSTATRS TCS

Best Arabidopsis Sequence Match ( AT5G22220.2 )
(BLAST)

001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DESGPDWNQM ITFDQDHAGP SDNKILEQPQ TPSSPTPEES TATRSPTGS

Arabidopsis Description

E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.