Factsheet for TraesCS5A01G125900.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G125100.1	Wheat	cytosol	98.87	98.87
TraesCS5D01G133600.1	Wheat	cytosol	98.42	98.42
HORVU5Hr1G040190.4	Barley	plastid	94.14	86.54
Os12t0158800-01	Rice	nucleus	84.46	84.08
OQU78759	Sorghum	plastid	69.82	82.01
Zm00001d023465_P002	Maize	cytosol	80.18	78.24
GSMUA_Achr5P17430_001	Banana	plastid	29.05	60.85
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	51.35	55.75
VIT_08s0007g02510.t01	Wine grape	plastid	57.88	55.15
GSMUA_Achr6P07100_001	Banana	mitochondrion	57.88	54.22
VIT_06s0080g01110.t01	Wine grape	nucleus	52.93	52.69
KRH72218	Soybean	nucleus	54.28	51.5
PGSC0003DMT400042347	Potato	plastid	55.41	51.46
Solyc01g007760.2.1	Tomato	plastid	55.18	51.15
KRH32815	Soybean	nucleus	53.6	51.07
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	51.58	51.0
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	51.58	50.0
KRH30372	Soybean	nucleus	50.9	49.13
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	50.0	49.01
PGSC0003DMT400015188	Potato	nucleus	48.87	48.98
KRH25298	Soybean	nucleus	49.55	48.89
TraesCS2A01G297400.1	Wheat	nucleus	47.07	45.63
CDX84581	Canola	plastid	47.52	45.47
Bra023047.1-P	Field mustard	plastid	47.52	44.99
CDX84164	Canola	plastid	48.2	44.4
Bra017268.1-P	Field mustard	plastid	48.42	44.15
Bra005305.1-P	Field mustard	plastid	47.75	44.07
CDY43755	Canola	plastid	47.97	43.56
CDX92373	Canola	nucleus	42.12	42.21
CDX98588	Canola	nucleus	42.12	42.21
Bra002398.1-P	Field mustard	nucleus	41.89	41.99
CDX70990	Canola	nucleus	42.57	41.18
AT5G22220.2	Thale cress	cytosol	43.24	40.94
Bra006615.1-P	Field mustard	nucleus	42.57	40.82
CDX75078	Canola	plastid	48.2	40.07
CDX88807	Canola	cytosol	42.57	39.13
CDX79651	Canola	plastid	45.72	39.11
AT2G36010.2	Thale cress	plastid	43.24	37.35
PGSC0003DMT400013986	Potato	cytosol	7.43	33.67
KRH26172	Soybean	nucleus	13.51	31.91
TraesCS2A01G031800.1	Wheat	plastid	30.86	30.31
Solyc06g074010.2.1	Tomato	nucleus	48.65	25.5

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim
InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR036388
PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF48	SMART:SM01372	SUPFAM:SSF144074
SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS5A01G125900	EnsemblPlants:TraesCS5A01G125900.3	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	TIGR:cd14660
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:277332934..277337237

Molecular Weight (calculated)

48647.4 Da

IEP (calculated)

4.409

GRAVY (calculated)

-0.582

Length

444 amino acids

Sequence
(BLAST)

001: MAAAAGGTSS EGAARVLLQR YQPFGSPPGE YHHFGPADGG GTAEMTEAVV LRTPLKRKHN REDNEVAESN DWMMSPGYAN AANSPIPTLP SGKGSKMSAK
101: PKAAKGQKSC PQTPLFSGSP GNPATPVGGC RYDSSLGLLT KKFLNLLKGA PGGMVDLNNA AETLEVQKRR IYDITNVLEG IGLIEKKLKN NIRWKGIDDS
201: RPGEVSDDMS ILQGDIEALT LQEHSLDGQI SEMRDKLREL TEDENNQKWL YVTEDDIKSL PCFQNQTLIA IKAPHGTTLE VPDPDEVNDY PQRRYRIVLR
301: STMGPIDVYL VSQFEEMSGM ETPPRPAQTI SMDYLENPRT PLATGSNKDV EMENVQQGLI MPPDAPTTQD IGGMMKIVPS ELDTDADYWL LSDTGVSITD
401: MWKTAPDVEW EGIDINAEDF LEVGTPRQQD QPPSEMVDHP SCIS

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.