CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32815	Soybean	nucleus	93.38	93.78
VIT_08s0007g02510.t01	Wine grape	plastid	68.16	68.45
Solyc01g007760.2.1	Tomato	plastid	62.82	61.38
PGSC0003DMT400042347	Potato	plastid	62.39	61.09
GSMUA_Achr5P17430_001	Banana	plastid	26.5	58.49
KRH25298	Soybean	nucleus	55.98	58.22
KRH30372	Soybean	nucleus	56.84	57.83
GSMUA_Achr6P07100_001	Banana	mitochondrion	57.05	56.33
Os12t0158800-01	Rice	nucleus	53.21	55.83
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.72	55.75
GSMUA_Achr2P20420_001	Banana	nucleus	49.57	55.5
OQU78759	Sorghum	plastid	44.23	54.76
TraesCS5B01G125100.1	Wheat	cytosol	51.71	54.5
TraesCS5A01G125900.3	Wheat	cytosol	51.5	54.28
TraesCS5D01G133600.1	Wheat	cytosol	51.28	54.05
CDX84581	Canola	plastid	53.21	53.66
Bra005305.1-P	Field mustard	plastid	54.91	53.43
Bra023047.1-P	Field mustard	plastid	53.42	53.3
Bra017268.1-P	Field mustard	plastid	54.91	52.77
CDX84164	Canola	plastid	54.06	52.49
CDY43755	Canola	plastid	54.7	52.35
Os04t0416100-01	Rice	nucleus	35.68	52.35
Zm00001d023465_P002	Maize	cytosol	50.64	52.09
GSMUA_Achr10P...	Banana	nucleus, plastid	48.5	51.59
HORVU5Hr1G040190.4	Barley	plastid	52.14	50.52
KRH26172	Soybean	nucleus	20.09	50.0
Zm00001d050664_P002	Maize	mitochondrion, plastid	40.17	49.47
CDX75078	Canola	plastid	55.34	48.5
Os02t0537500-01	Rice	mitochondrion	48.93	48.21
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	46.79	47.82
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	46.58	47.6
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	46.37	47.38
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	46.37	47.38
CDX79651	Canola	plastid	51.28	46.24
Zm00001d016737_P002	Maize	mitochondrion, plastid	45.73	45.92
AT2G36010.2	Thale cress	plastid	49.57	45.14
TraesCS2A01G297400.1	Wheat	nucleus	44.02	44.98
TraesCS2B01G313600.2	Wheat	nucleus	43.8	44.86
Zm00001d003755_P001	Maize	nucleus	35.04	44.69
TraesCS2D01G295300.2	Wheat	mitochondrion	43.38	44.32
OQU81541	Sorghum	nucleus	42.09	43.11
OQU85083	Sorghum	mitochondrion, plastid	42.73	42.46
KRH61047	Soybean	cytosol, nucleus, plastid	30.34	40.0
HORVU2Hr1G073750.2	Barley	plastid	43.59	36.89
KRH51709	Soybean	nucleus	32.05	35.21
KRH07603	Soybean	cytosol	13.03	32.28

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100811762	MapMan:13.1.2.2	MapMan:15.5.10	EMBL:ACUP02001190	ncoils:Coil
InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	EnsemblPlantsGene:GLYMA_02G198700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983
UniProt:I1JGJ7	InterPro:IPR036388	EnsemblPlants:KRH72218	ProteinID:KRH72218	ProteinID:KRH72218.1	PFAM:PF02319
PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785
UniParc:UPI00023BCCAB	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:38047464..38052660

Molecular Weight (calculated)

51116.1 Da

IEP (calculated)

4.774

GRAVY (calculated)

-0.535

Length

468 amino acids

Sequence
(BLAST)

001: MSSAAGVPDR LASQPRGAAG APALPPLKRH LAFVTKPPFA PPDEYHSFSS ADSRRAADEA VVVRSPYMKR KSGMTDSEGE SQAQKWSNSP GYTNVSNVTN
101: NSPFKTPVSA KGGRAQKAKA SKEGRSCPPT PMSNAGSPSP LTPASSCRYD SSLGLLTKKF INLVKHAEDG ILDLNKAAET LEVQKRRIYD ITNVLEGIGL
201: IEKKLKNRIH WKGIESSTSG EVDGDISVLK AEVEKLSLEE QGLDDQIREM QERLRNLSEN ENNQKCLFVT EEDIKGLPCF QNETLIAIKA PHGTTLEVPD
301: PEEAVDYPQR RYRIILRSTM GPIDVYLISQ FEEKFEEVNG AELPMIPLAS SSGSNEQLMT EMVPAECSGK ELEPQTQLSS HAFSDLNASQ EFAGGMMKIV
401: PSDVDNDADY WLLSDADVSI TDMWRTDSTV DWNGIDMLHP DFGIISRPQS PSSGLAEVPS TGANSIQK

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.