Factsheet for HORVU5Hr1G040190.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G125900.3	Wheat	cytosol	86.54	94.14
TraesCS5B01G125100.1	Wheat	cytosol	86.34	93.92
TraesCS5D01G133600.1	Wheat	cytosol	86.13	93.69
Os12t0158800-01	Rice	nucleus	75.78	82.06
OQU78759	Sorghum	plastid	63.98	81.75
Zm00001d023465_P002	Maize	cytosol	73.71	78.24
GSMUA_Achr5P17430_001	Banana	plastid	26.92	61.32
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.0	55.5
VIT_08s0007g02510.t01	Wine grape	plastid	52.38	54.29
GSMUA_Achr6P07100_001	Banana	mitochondrion	52.59	53.59
KRH72218	Soybean	nucleus	50.52	52.14
VIT_06s0080g01110.t01	Wine grape	nucleus	48.03	52.02
PGSC0003DMT400042347	Potato	plastid	51.35	51.88
KRH32815	Soybean	nucleus	49.69	51.5
Solyc01g007760.2.1	Tomato	plastid	50.93	51.36
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	46.79	50.33
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	46.79	49.34
KRH30372	Soybean	nucleus	46.58	48.91
PGSC0003DMT400015188	Potato	nucleus	44.72	48.76
KRH25298	Soybean	nucleus	45.34	48.67
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	45.55	48.57
CDX84581	Canola	plastid	43.69	45.47
Bra023047.1-P	Field mustard	plastid	43.69	44.99
Bra017268.1-P	Field mustard	plastid	44.72	44.35
CDX84164	Canola	plastid	44.1	44.19
Bra005305.1-P	Field mustard	plastid	43.89	44.07
CDY43755	Canola	plastid	44.31	43.76
CDX98588	Canola	nucleus	38.72	42.21
CDX92373	Canola	nucleus	38.72	42.21
Bra002398.1-P	Field mustard	nucleus	38.51	41.99
CDX70990	Canola	nucleus	38.92	40.96
Bra006615.1-P	Field mustard	nucleus	38.72	40.39
AT5G22220.2	Thale cress	cytosol	39.13	40.3
CDX75078	Canola	plastid	44.31	40.07
CDX79651	Canola	plastid	42.24	39.31
CDX88807	Canola	cytosol	38.51	38.51
AT2G36010.2	Thale cress	plastid	39.34	36.97
HORVU2Hr1G073750.2	Barley	plastid	42.24	36.89
KRH26172	Soybean	nucleus	12.42	31.91
PGSC0003DMT400013986	Potato	cytosol	6.42	31.63
HORVU2Hr1G004820.2	Barley	cytosol	7.25	28.0
Solyc06g074010.2.1	Tomato	nucleus	44.51	25.38

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	UniProt:A0A287QWY3	ncoils:Coil	InterPro:E2F
InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:HORVU5Hr1G040190	EnsemblPlants:HORVU5Hr1G040190.4
InterPro:IPR036388	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF48	SMART:SM01372
SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI000B464290	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

No Description!

Coordinates

chrchr5H:+:296068723..296073711

Molecular Weight (calculated)

52775.5 Da

IEP (calculated)

4.738

GRAVY (calculated)

-0.548

Length

483 amino acids

Sequence
(BLAST)

001: LVFSPSAAKN PQIQTLSAPP RPAPGPIHPL LRAAPRITMA AAGGGTSSEG AARVLLQRYQ PFGSPPGEYH HFGPADGGAS AEMTEAVVLR TPLKRKHNRE
101: GNEVAESNDW MMSPGYANAG NSPIPTPPSG KGTKLSAKPK AVKGQKSCPQ TPLFSGSPGN PATPVGGCRY DSSLGLLTKK FLNLLKGAPG GMVDLNNAAE
201: MLEVQKRRIY DITNVLEGIG LIEKKLKNNI RWKGIDDSRP GEVSDDMSIL QGDIEALTLQ EHSLDRQIRL MRDRLRELTE DENNQKWLYV TEDDIKSLPC
301: FQNQTLIAIK APHGTTLEVP DPDEVNDYPQ RRYRTVLRST MGPIDVYLVS QFEEMSGMET PPRPAQTINM DSLENPRTPL SAGSNKDVEM ENVQQGLIIP
401: SDAPTTSQDI GGMMKIVPSE LDTDADYWLL SDTGVSITDM WKTTPDVEWD GIDINTEDFL EVGTPRQQDQ LPSDMVDHPS CIS

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.