Factsheet for Solyc11g068800.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	88.64	87.86
VIT_06s0080g01110.t01	Wine grape	nucleus	65.48	65.92
KRH30372	Soybean	nucleus	64.59	63.04
KRH25298	Soybean	nucleus	62.58	62.44
Solyc01g007760.2.1	Tomato	plastid	59.91	56.16
GSMUA_Achr5P17430_001	Banana	plastid	26.5	56.13
GSMUA_Achr2P20420_001	Banana	nucleus	49.89	53.59
OQU78759	Sorghum	plastid	44.99	53.44
AT5G22220.2	Thale cress	cytosol	55.68	53.3
CDX92373	Canola	nucleus	52.34	53.05
GSMUA_Achr10P...	Banana	nucleus, plastid	51.89	52.95
GSMUA_Achr6P07100_001	Banana	mitochondrion	55.9	52.95
CDX98588	Canola	nucleus	52.12	52.82
Bra002398.1-P	Field mustard	nucleus	51.89	52.6
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.88	52.57
TraesCS5B01G125100.1	Wheat	cytosol	51.45	52.03
TraesCS5D01G133600.1	Wheat	cytosol	51.22	51.8
CDX70990	Canola	nucleus	52.78	51.63
TraesCS5A01G125900.3	Wheat	cytosol	51.0	51.58
Os04t0416100-01	Rice	nucleus	36.08	50.78
Bra006615.1-P	Field mustard	nucleus	52.34	50.76
Os12t0158800-01	Rice	nucleus	49.67	50.0
CDX88807	Canola	cytosol	52.12	48.45
Zm00001d050664_P002	Maize	mitochondrion, plastid	40.09	47.37
Zm00001d023465_P002	Maize	cytosol	47.88	47.25
HORVU5Hr1G040190.4	Barley	plastid	50.33	46.79
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	47.22	46.29
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	46.99	46.07
Os02t0537500-01	Rice	mitochondrion	48.55	45.89
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	46.77	45.85
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	46.77	45.85
Zm00001d016737_P002	Maize	mitochondrion, plastid	46.99	45.28
Zm00001d003755_P001	Maize	nucleus	34.97	42.78
OQU81541	Sorghum	nucleus	42.98	42.23
OQU85083	Sorghum	mitochondrion, plastid	43.88	41.83
TraesCS2A01G297400.1	Wheat	nucleus	42.09	41.27
TraesCS2B01G313600.2	Wheat	nucleus	41.87	41.14
TraesCS2D01G295300.2	Wheat	mitochondrion	41.87	41.05
Solyc06g074010.2.1	Tomato	nucleus	71.71	38.02
HORVU2Hr1G073750.2	Barley	plastid	41.2	33.45
Solyc04g081350.2.1	Tomato	plastid	28.73	32.49

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim
InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR036388	UniProt:K4DA37	PFAM:PF02319
PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785
EnsemblPlantsGene:Solyc11g068800.1	EnsemblPlants:Solyc11g068800.1.1	UniParc:UPI000276A618	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

No Description!

Coordinates

chr11:-:53420617..53425308

Molecular Weight (calculated)

49698.0 Da

IEP (calculated)

4.415

GRAVY (calculated)

-0.635

Length

449 amino acids

Sequence
(BLAST)

001: MKPQQQQQQQ QSLKRQLQFS SIKPVFGDYH RFSTEPVDCS TQEPPGIVVK TPPLKRKSAA ANYGQVVGDR NPACGYANVN SPLQTTPVSG KDAQKVPRTS
101: KARSASQAVT SNVGSPSGNN VTPVGPCRYD SSLGLLTKKF INLIKHAEDG MLDLNKAADT LEVQKRRIYD ITNVLEGIGL IEKKLKNRIQ WKGQGVSKPG
201: EADESVASLQ AEVDKLTIEE HRLDDQIREM QESLRDLSED ENNQRWLFVT EDDIKSLPCF QNETLIAIKA PHGTTLEVPD PDEAVDYPQR RYRIVLRSTM
301: GPIDVYLVSQ FEEKFEEVNA VEAPPSVPST SGLNENETPT LATEENEEVD IGMEGKENQS VRSEVGTSQD FMTGIMKIVP DVDNEADYWL LSDADVSITD
401: MWRTESAIDW NELDVIQEDY SIANVSTPRA QTPPPATTEV PSAANTSGC

Best Arabidopsis Sequence Match ( AT5G22220.2 )
(BLAST)

001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DESGPDWNQM ITFDQDHAGP SDNKILEQPQ TPSSPTPEES TATRSPTGS

Arabidopsis Description

E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.