Factsheet for Zm00001d016737_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050664_P002	Maize	mitochondrion, plastid	67.6	82.89
OQU85083	Sorghum	mitochondrion, plastid	83.05	82.17
Os02t0537500-01	Rice	mitochondrion	77.25	75.79
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	69.31	70.52
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	69.1	70.31
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	68.88	70.09
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	67.6	68.78
GSMUA_Achr5P17430_001	Banana	plastid	26.82	58.96
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.21	53.79
GSMUA_Achr6P07100_001	Banana	mitochondrion	52.79	51.9
VIT_06s0080g01110.t01	Wine grape	nucleus	48.5	50.67
VIT_08s0007g02510.t01	Wine grape	plastid	49.79	49.79
Zm00001d023465_P002	Maize	cytosol	46.78	47.91
PGSC0003DMT400042347	Potato	plastid	49.14	47.91
PGSC0003DMT400015188	Potato	nucleus	45.06	47.4
Solyc01g007760.2.1	Tomato	plastid	48.71	47.39
KRH25298	Soybean	nucleus	45.71	47.33
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	45.28	46.99
KRH30372	Soybean	nucleus	46.35	46.96
Zm00001d003755_P001	Maize	nucleus	36.91	46.87
KRH72218	Soybean	nucleus	45.92	45.73
KRH32815	Soybean	nucleus	45.28	45.28
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	43.99	45.25
CDX92373	Canola	nucleus	42.06	44.24
CDX84164	Canola	plastid	45.71	44.19
CDX98588	Canola	nucleus	41.85	44.02
Bra002398.1-P	Field mustard	nucleus	41.85	44.02
Bra005305.1-P	Field mustard	plastid	45.06	43.66
CDY43755	Canola	plastid	45.71	43.56
CDX84581	Canola	plastid	43.35	43.53
Bra017268.1-P	Field mustard	plastid	45.49	43.53
Bra023047.1-P	Field mustard	plastid	43.56	43.28
Bra006615.1-P	Field mustard	nucleus	42.06	42.33
CDX70990	Canola	nucleus	41.63	42.27
AT5G22220.2	Thale cress	cytosol	42.06	41.79
CDX88807	Canola	cytosol	42.27	40.79
CDX75078	Canola	plastid	45.28	39.51
CDX79651	Canola	plastid	42.27	37.96
AT2G36010.2	Thale cress	plastid	41.42	37.55
KRH26172	Soybean	nucleus	13.09	32.45
Zm00001d004512_P001	Maize	plastid	31.55	31.41
PGSC0003DMT400013986	Potato	cytosol	6.01	28.57
Solyc06g074010.2.1	Tomato	nucleus	45.28	24.91

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	UniProt:A0A1D6HA41	ProteinID:AQK71573.1	ncoils:Coil
InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR036388
PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074
SUPFAM:SSF46785	UniParc:UPI000843AA9B	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d016737	EnsemblPlants:Zm00001d016737_P002
EnsemblPlants:Zm00001d016737_T002	SEG:seg	:	:	:	:

Description

E2F-DP-transcription factor 24Transcription factor E2FB

Coordinates

chr5:+:174727108..174731854

Molecular Weight (calculated)

50901.8 Da

IEP (calculated)

4.838

GRAVY (calculated)

-0.551

Length

466 amino acids

Sequence
(BLAST)

001: MSGVGSGRPP AAQKILQSLR PPLSFATPSR SPFAAPDDYH RFPTPAAATA PAATSGGVGA GAPPRDTIEE GLFIRTPLKR KATSEENDAA AEPSDCIITS
101: PMPTSVSGKT VKASKAKAKN SKTGPQTPTS NVGSPLNPPT PVGTCRYDSS LGLLTKKFIN LLKQAPDGIL DLNNAAETLE VQKRRIYDIT NVLEGIGLIE
201: KTLKNRIRWK ALDDSSVQLD NGISALQVPF AEVENLSLQE QALDERISDM REKLRGLTED ENNKRWLYVT EDDIKGLPSF QNETLIAIKA PHGTTLEVPD
301: PDEAGDYLQR RYRIVLRSTM GPIDVYLVSQ FDEKFEELGG VATPVKHSSV PRHQPAEDFN TYAGQSSTPM DVAHDVQHGQ KIPQDPSALH DFGGMTRISP
401: SDVHTDSDYW LLTEGDVSMT DMWKTGQEVQ WDQMDFLSED VVTPRAHNQQ PVTVDGPHME VPSMDP

Best Arabidopsis Sequence Match ( AT2G36010.3 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQLQ AEIENLALEE QALDNQIRQT EERLRDLSEN EKNQKWLFVT EEDIKSLPGF
301: QNQTLIAVKA PHGTTLEVPD PDEAADHPQR RYRIILRSTM GPIDVYLVSE FEGKFEDTNG SGAAPPACLP IASSSGSTGH HDIEALTVDN PETAIVSHDH
401: PHPQPGDTSD LNYLQEQVGG MLKITPSDVE NDESDYWLLS NAEISMTDIW KTDSGIDWDY GIADVSTPPP GMGEIAPTAV DSTPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.