Factsheet for HORVU0Hr1G038470.7

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	96.07	96.07
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	95.85	95.85
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	93.01	93.01
Os02t0537500-01	Rice	mitochondrion	72.93	70.32
Zm00001d016737_P002	Maize	mitochondrion, plastid	68.78	67.6
Zm00001d050664_P002	Maize	mitochondrion, plastid	55.68	67.11
OQU85083	Sorghum	mitochondrion, plastid	63.97	62.21
GSMUA_Achr5P17430_001	Banana	plastid	27.29	58.96
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.47	54.28
GSMUA_Achr6P07100_001	Banana	mitochondrion	54.59	52.74
VIT_06s0080g01110.t01	Wine grape	nucleus	49.78	51.12
VIT_08s0007g02510.t01	Wine grape	plastid	51.75	50.86
KRH25298	Soybean	nucleus	47.82	48.67
PGSC0003DMT400042347	Potato	plastid	50.22	48.12
KRH30372	Soybean	nucleus	48.25	48.04
Solyc01g007760.2.1	Tomato	plastid	50.22	48.02
HORVU5Hr1G040190.4	Barley	plastid	49.34	46.79
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	45.85	46.77
PGSC0003DMT400015188	Potato	nucleus	44.98	46.5
KRH72218	Soybean	nucleus	47.38	46.37
KRH32815	Soybean	nucleus	46.51	45.71
CDX98588	Canola	nucleus	44.1	45.6
CDX92373	Canola	nucleus	44.1	45.6
HORVU2Hr1G073750.2	Barley	plastid	55.02	45.57
Bra023047.1-P	Field mustard	plastid	46.51	45.42
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	44.76	45.25
Bra002398.1-P	Field mustard	nucleus	43.67	45.15
CDX84581	Canola	plastid	45.63	45.04
Bra005305.1-P	Field mustard	plastid	46.94	44.7
CDX84164	Canola	plastid	46.94	44.61
AT5G22220.2	Thale cress	cytosol	45.41	44.35
Bra017268.1-P	Field mustard	plastid	46.94	44.15
CDX70990	Canola	nucleus	44.1	44.01
CDY43755	Canola	plastid	46.94	43.97
Bra006615.1-P	Field mustard	nucleus	43.89	43.41
CDX88807	Canola	cytosol	44.1	41.82
CDX75078	Canola	plastid	46.94	40.26
CDX79651	Canola	plastid	45.2	39.88
AT2G36010.2	Thale cress	plastid	44.32	39.49
PGSC0003DMT400013986	Potato	cytosol	6.99	32.65
KRH26172	Soybean	nucleus	13.32	32.45
HORVU2Hr1G004820.2	Barley	cytosol	7.21	26.4
Solyc06g074010.2.1	Tomato	nucleus	45.85	24.79

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	UniProt:A0A287ECE7	ncoils:Coil	InterPro:E2F
InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:HORVU0Hr1G038470	EnsemblPlants:HORVU0Hr1G038470.7
InterPro:IPR036388	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF48	SMART:SM01372
SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI000B487CD8	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

No Description!

Coordinates

chrchrUn:-:246996076..247012164

Molecular Weight (calculated)

50160.6 Da

IEP (calculated)

4.781

GRAVY (calculated)

-0.635

Length

458 amino acids

Sequence
(BLAST)

001: MSGGGRPPAA QKILQSLRPP PVFSTPSRPP FASPDDYHRF HAPTTPSASG SGGIGAGGVG GDIDERLVIR TQLKRKATRE ENNVTESSDC MIVTTGVTGN
101: PLLTPVSGKA VKNSKSKAKN NKAGPQTPTP CTGSPLNPST PAGTCRYDSS LGLLTKKFIN LLKQAEDGIL DLNNAAETLE VQKRRIYDIT NVLEGIGLIE
201: KTLKNRIRWK GLDDSGVELD NGLSGLQQTE VENLNLQEQA LDERISDMRE KLRGLTEDEN SQRWLYVTED DIKGLPCFQN ETLIAIKAPH GTTLEVPDPD
301: EAGDYLQRRY RIVLRSTLGP IDVYLVSQFD DGFENLGGAA TPPRHTNVPE HGPCEDLHAT YATQSSKSIN VEYNIQHRQN TPQDPTSNDY GGMTRIIPSD
401: VNTDADYWLL TEGDVSITDM WETAPEVQWD TAVFLPEDVS SPHAHHSPRM EVPSMDQP

Best Arabidopsis Sequence Match ( AT2G36010.3 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQLQ AEIENLALEE QALDNQIRQT EERLRDLSEN EKNQKWLFVT EEDIKSLPGF
301: QNQTLIAVKA PHGTTLEVPD PDEAADHPQR RYRIILRSTM GPIDVYLVSE FEGKFEDTNG SGAAPPACLP IASSSGSTGH HDIEALTVDN PETAIVSHDH
401: PHPQPGDTSD LNYLQEQVGG MLKITPSDVE NDESDYWLLS NAEISMTDIW KTDSGIDWDY GIADVSTPPP GMGEIAPTAV DSTPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.