Factsheet for Bra002398.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92373	Canola	nucleus	98.65	98.65
Bra006615.1-P	Field mustard	nucleus	85.33	81.64
AT5G22220.2	Thale cress	cytosol	82.17	77.61
VIT_06s0080g01110.t01	Wine grape	nucleus	53.95	53.59
KRH25298	Soybean	nucleus	53.27	52.44
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	52.6	51.89
KRH30372	Soybean	nucleus	53.72	51.74
PGSC0003DMT400015188	Potato	nucleus	51.47	51.47
GSMUA_Achr5P17430_001	Banana	plastid	23.93	50.0
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	50.79	49.67
Os04t0416100-01	Rice	nucleus	34.54	47.96
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.57	47.19
GSMUA_Achr10P...	Banana	nucleus, plastid	45.82	46.14
OQU78759	Sorghum	plastid	39.05	45.77
GSMUA_Achr2P20420_001	Banana	nucleus	42.89	45.45
Zm00001d050664_P002	Maize	mitochondrion, plastid	38.37	44.74
Bra023047.1-P	Field mustard	plastid	46.73	44.14
GSMUA_Achr6P07100_001	Banana	mitochondrion	47.18	44.09
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	45.15	43.67
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	45.15	43.67
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	45.15	43.67
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	45.15	43.67
Bra005305.1-P	Field mustard	plastid	47.18	43.45
Os12t0158800-01	Rice	nucleus	43.57	43.27
Os02t0537500-01	Rice	mitochondrion	45.82	42.74
TraesCS5B01G125100.1	Wheat	cytosol	42.21	42.12
Bra017268.1-P	Field mustard	plastid	46.28	42.09
TraesCS5A01G125900.3	Wheat	cytosol	41.99	41.89
Zm00001d016737_P002	Maize	mitochondrion, plastid	44.02	41.85
TraesCS5D01G133600.1	Wheat	cytosol	41.53	41.44
Zm00001d023465_P002	Maize	cytosol	42.21	41.1
Bra014096.1-P	Field mustard	nucleus	32.28	38.96
OQU85083	Sorghum	mitochondrion, plastid	41.31	38.85
Zm00001d003755_P001	Maize	nucleus	32.05	38.69
HORVU5Hr1G040190.4	Barley	plastid	41.99	38.51
TraesCS2D01G295300.2	Wheat	mitochondrion	39.73	38.43
TraesCS2B01G313600.2	Wheat	nucleus	39.5	38.29
TraesCS2A01G297400.1	Wheat	nucleus	39.5	38.21
OQU81541	Sorghum	nucleus	38.6	37.42
HORVU2Hr1G073750.2	Barley	plastid	39.5	31.65
Solyc06g074010.2.1	Tomato	nucleus	50.79	26.56

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	EnsemblPlantsGene:Bra002398	EnsemblPlants:Bra002398.1	EnsemblPlants:Bra002398.1-P
ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983
InterPro:IPR036388	UniProt:M4CDW7	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72
SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI0002544685	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT5G22220 (E=7e-111) E2F1, E2FB, ATE2FB | E2F1; DNA binding / protein binding / transcription factor

Coordinates

chrA10:-:9838255..9841660

Molecular Weight (calculated)

49073.2 Da

IEP (calculated)

4.529

GRAVY (calculated)

-0.733

Length

443 amino acids

Sequence
(BLAST)

001: MSDSHQRPEH NPPSKRQHHP SAASMKPPLV APGEYHRFDA AETHGGGGLD QVSEEIVIKS SLKRKTDIVN RIDEPSELNT GLLQTPVPAK GGKAKKSSRS
101: VKANAGSPGN NLAQAGACRY DSSLALLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI KWKGLDVSNP GETMENIANL
201: QDEIQNLSFE EAKLDDQIRE SQERLTSLSE DENNKRLLFV AEDDIKNLPC FQNSTLIAVK APHGTTLEVP DPDEAGGYPQ RRYRIILRST MGPIDVYLVS
301: QFEETFEDIP NADEPSNIPS TSGLPDNQDV SMPMKEDITV KNMETQEVDD TQRASSEIES HDFVDGIMKI VPPDLDMDVD YWLRSEVGEV SITDMWPNES
401: EPTWNQMVSF DQGAGPSNTT MEQSQTTSSP KPEQSTAKRS TSS

Best Arabidopsis Sequence Match ( AT5G22220.2 )
(BLAST)

001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DESGPDWNQM ITFDQDHAGP SDNKILEQPQ TPSSPTPEES TATRSPTGS

Arabidopsis Description

E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.