Factsheet for Bra023047.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84581	Canola	plastid	96.38	97.41
Bra005305.1-P	Field mustard	plastid	81.24	79.21
Bra017268.1-P	Field mustard	plastid	79.32	76.39
AT2G36010.2	Thale cress	plastid	67.8	61.87
GSMUA_Achr5P17430_001	Banana	plastid	25.16	55.66
VIT_08s0007g02510.t01	Wine grape	plastid	55.22	55.58
KRH72218	Soybean	nucleus	53.3	53.42
KRH32815	Soybean	nucleus	52.45	52.79
Solyc01g007760.2.1	Tomato	plastid	52.88	51.77
Os04t0416100-01	Rice	nucleus	35.18	51.72
PGSC0003DMT400042347	Potato	plastid	52.67	51.67
OQU78759	Sorghum	plastid	40.94	50.79
Zm00001d050664_P002	Maize	mitochondrion, plastid	39.23	48.42
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	42.0	48.17
GSMUA_Achr2P20420_001	Banana	nucleus	42.64	47.85
TraesCS5D01G133600.1	Wheat	cytosol	45.2	47.75
TraesCS5B01G125100.1	Wheat	cytosol	45.2	47.75
TraesCS5A01G125900.3	Wheat	cytosol	44.99	47.52
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	45.84	46.94
Os12t0158800-01	Rice	nucleus	44.56	46.86
Bra002398.1-P	Field mustard	nucleus	44.14	46.73
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	45.63	46.72
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	45.63	46.72
GSMUA_Achr6P07100_001	Banana	mitochondrion	47.12	46.62
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	45.42	46.51
GSMUA_Achr10P...	Banana	nucleus, plastid	43.28	46.14
Zm00001d023465_P002	Maize	cytosol	43.92	45.27
Os02t0537500-01	Rice	mitochondrion	45.84	45.26
Bra006615.1-P	Field mustard	nucleus	44.14	44.71
TraesCS2B01G313600.2	Wheat	nucleus	42.86	43.98
HORVU5Hr1G040190.4	Barley	plastid	44.99	43.69
TraesCS2A01G297400.1	Wheat	nucleus	42.64	43.67
Zm00001d016737_P002	Maize	mitochondrion, plastid	43.28	43.56
Zm00001d003755_P001	Maize	nucleus	33.69	43.05
TraesCS2D01G295300.2	Wheat	mitochondrion	42.0	43.01
OQU85083	Sorghum	mitochondrion, plastid	41.58	41.4
Bra014096.1-P	Field mustard	nucleus	31.98	40.87
OQU81541	Sorghum	nucleus	39.66	40.7
HORVU2Hr1G073750.2	Barley	plastid	40.51	34.36

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	EnsemblPlantsGene:Bra023047	EnsemblPlants:Bra023047.1	EnsemblPlants:Bra023047.1-P
ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983
InterPro:IPR036388	UniProt:M4E2P6	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72
SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI000253FF02	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT2G36010 (E=6e-196) E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FACTOR 3); DNA binding / transcription factor

Coordinates

chrA03:+:8395920..8398905

Molecular Weight (calculated)

51349.9 Da

IEP (calculated)

4.555

GRAVY (calculated)

-0.554

Length

469 amino acids

Sequence
(BLAST)

001: MSGGVRPSPG HSQPPPSSSN PVVPPIRRHL AFASTKPPFH PSDYRRFTPS YDSSSLCGIV DREEDAVVLR SPSRKRKSMM DVVTTTTTTS NSNGFTSTGS
101: TSIHNSPCLT PVSAKGGRVN TKSRAKGTQS LPQTPISNAG SPATLTPSGS CRYDSSLGLL TKKFVNLIKQ AEDGMLDLNK AAEVLEVQKR RIYDITNVLE
201: GIDLIEKPFK NRILWKGVDA SRPGDVDADV SVLHAEIENL NLEEQALDSQ IRETEERLRD LSENEKNQKW LFVTEEDIKS LPGFQNQTLI AVKAPHGTTL
301: EVPDPDEAGD LPQRRYRIIL RSTMGPIDVY LVSEFEDTNG SVAPPACLPP IASCSGSTEN HDIEALTLDN TETTIEHQMS QDHEHAQPGD TSDLNYLQEQ
401: VGGMLKITPS DIENDDTDYW LLSNAEISMT DIWNTDSGID WDYGIADVST PPPVMGEEIA PVAIDSKPR

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.