Factsheet for PGSC0003DMT400042347

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g007760.2.1	Tomato	plastid	98.12	97.91
VIT_08s0007g02510.t01	Wine grape	plastid	65.48	67.17
KRH72218	Soybean	nucleus	61.09	62.39
KRH32815	Soybean	nucleus	59.83	61.37
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	54.81	57.84
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.95	57.21
PGSC0003DMT400015188	Potato	nucleus	52.93	57.11
GSMUA_Achr5P17430_001	Banana	plastid	25.31	57.08
OQU78759	Sorghum	plastid	44.98	56.88
GSMUA_Achr2P20420_001	Banana	nucleus	49.16	56.22
Os04t0416100-01	Rice	nucleus	37.45	56.11
TraesCS5B01G125100.1	Wheat	cytosol	51.67	55.63
GSMUA_Achr6P07100_001	Banana	mitochondrion	55.02	55.49
TraesCS5A01G125900.3	Wheat	cytosol	51.46	55.41
TraesCS5D01G133600.1	Wheat	cytosol	51.46	55.41
Os12t0158800-01	Rice	nucleus	51.26	54.93
Zm00001d023465_P002	Maize	cytosol	51.46	54.07
CDX84581	Canola	plastid	51.46	53.02
Bra005305.1-P	Field mustard	plastid	53.14	52.81
Bra023047.1-P	Field mustard	plastid	51.67	52.67
GSMUA_Achr10P...	Banana	nucleus, plastid	48.33	52.5
CDX84164	Canola	plastid	52.72	52.28
Bra017268.1-P	Field mustard	plastid	53.14	52.16
CDY43755	Canola	plastid	52.93	51.74
HORVU5Hr1G040190.4	Barley	plastid	51.88	51.35
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	48.74	50.87
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	48.54	50.66
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	48.54	50.66
Os02t0537500-01	Rice	mitochondrion	50.21	50.53
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	48.12	50.22
Zm00001d050664_P002	Maize	mitochondrion, plastid	39.54	49.74
Zm00001d016737_P002	Maize	mitochondrion, plastid	47.91	49.14
CDX75078	Canola	plastid	53.14	47.57
CDX79651	Canola	plastid	50.0	46.05
TraesCS2A01G297400.1	Wheat	nucleus	43.72	45.63
AT2G36010.2	Thale cress	plastid	48.95	45.53
TraesCS2B01G313600.2	Wheat	nucleus	43.31	45.3
OQU85083	Sorghum	mitochondrion, plastid	44.14	44.8
TraesCS2D01G295300.2	Wheat	mitochondrion	42.89	44.76
OQU81541	Sorghum	nucleus	42.26	44.2
Zm00001d003755_P001	Maize	nucleus	33.05	43.05
PGSC0003DMT400013986	Potato	cytosol	8.37	40.82
PGSC0003DMT400009682	Potato	plastid	31.17	37.25
HORVU2Hr1G073750.2	Barley	plastid	42.05	36.35

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:102584400	MapMan:13.1.2.2	MapMan:15.5.10	ncoils:Coil	InterPro:E2F
InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR036388	UniProt:M1BCW1
PFAM:PF02319	PFAM:PF16421	EnsemblPlantsGene:PGSC0003DMG400016418	PGSC:PGSC0003DMG400016418	EnsemblPlants:PGSC0003DMT400042347	PANTHER:PTHR12081
PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI000295560F	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	RefSeq:XP_006348486.1	SEG:seg	:	:	:

Description

E2F4,5 [Source:PGSC_GENE;Acc:PGSC0003DMG400016418]

Coordinates

chr1:+:3311893..3317036

Molecular Weight (calculated)

52579.4 Da

IEP (calculated)

4.734

GRAVY (calculated)

-0.629

Length

478 amino acids

Sequence
(BLAST)

001: MTGSSASTGA AAPPTAQSSS AAVNGGGRSQ ISHPIKRYLP FASMRPPFVT PEDYHRFSIP GVDSRIGSAS LQPEAIVVKS PALKRKTGYI KEVESSDWTA
101: NSGYADVANS PLGTPVSGKG GRAHGRSRAT KNNKSGPQTP VYNAGSPSPL TPASCRYDSS LGLLTKKFIN LIKHAEDGML DLNQAADTLE VQKRRIYDIT
201: NVLEGIGLIE KKLKNRIQWK GVDSSRPGEV DNDASILKAE TDRLSMEERR LDERIREMQE KLRDMSEDEN NQRWLFVTEE DIKSLPCFQN ETLIAVKAPH
301: GTTLEVPDPD EAVDYPQRRY RIILRSTMGP IDVYLVSQFE EKFEEMNGVE PPTTIPVASS SGSKDYPTME ISTVSNSVTE NEEQTHNVDH LSSDLGTSQD
401: YNGGMMKILP SDVDNDSDYW LLSDANVSIT DMWKTDSTVE WDGETLLRDF GIDDLGTPRA HTPSTIADVP DPMNVPPR

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.