Factsheet for PGSC0003DMT400050512

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	87.86	88.64
PGSC0003DMT400015188	Potato	nucleus	67.77	69.3
VIT_06s0080g01110.t01	Wine grape	nucleus	60.93	61.88
KRH30372	Soybean	nucleus	62.47	61.52
KRH25298	Soybean	nucleus	60.49	60.89
GSMUA_Achr5P17430_001	Banana	plastid	26.49	56.6
PGSC0003DMT400042347	Potato	plastid	57.84	54.81
GSMUA_Achr10P...	Banana	nucleus, plastid	50.99	52.5
OQU78759	Sorghum	plastid	43.71	52.38
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.02	52.08
AT5G22220.2	Thale cress	cytosol	53.2	51.39
CDX92373	Canola	nucleus	50.11	51.24
CDX98588	Canola	nucleus	49.89	51.02
GSMUA_Achr2P20420_001	Banana	nucleus	47.02	50.96
GSMUA_Achr6P07100_001	Banana	mitochondrion	53.2	50.84
Bra002398.1-P	Field mustard	nucleus	49.67	50.79
Os04t0416100-01	Rice	nucleus	35.76	50.78
CDX70990	Canola	nucleus	51.21	50.54
TraesCS5B01G125100.1	Wheat	cytosol	49.45	50.45
TraesCS5D01G133600.1	Wheat	cytosol	49.23	50.23
TraesCS5A01G125900.3	Wheat	cytosol	49.01	50.0
Bra006615.1-P	Field mustard	nucleus	50.33	49.24
Os12t0158800-01	Rice	nucleus	48.12	48.88
Zm00001d050664_P002	Maize	mitochondrion, plastid	39.96	47.63
CDX88807	Canola	cytosol	50.33	47.2
Zm00001d023465_P002	Maize	cytosol	45.92	45.71
HORVU5Hr1G040190.4	Barley	plastid	48.57	45.55
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	45.47	44.98
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	45.47	44.98
Os02t0537500-01	Rice	mitochondrion	47.02	44.84
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	45.25	44.76
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	45.25	44.76
Zm00001d016737_P002	Maize	mitochondrion, plastid	45.25	43.99
Zm00001d003755_P001	Maize	nucleus	34.88	43.05
OQU81541	Sorghum	nucleus	42.16	41.79
OQU85083	Sorghum	mitochondrion, plastid	41.94	40.34
TraesCS2B01G313600.2	Wheat	nucleus	40.62	40.26
TraesCS2A01G297400.1	Wheat	nucleus	40.62	40.17
TraesCS2D01G295300.2	Wheat	mitochondrion	40.4	39.96
PGSC0003DMT400013986	Potato	cytosol	8.39	38.78
PGSC0003DMT400009682	Potato	plastid	29.36	33.25
HORVU2Hr1G073750.2	Barley	plastid	39.96	32.73

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:102593965	MapMan:13.1.2.2	MapMan:15.5.10	ncoils:Coil	InterPro:E2F
InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR036388	UniProt:M1BQE9
PFAM:PF02319	PFAM:PF16421	EnsemblPlantsGene:PGSC0003DMG400019629	PGSC:PGSC0003DMG400019629	EnsemblPlants:PGSC0003DMT400050512	PANTHER:PTHR12081
PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI000294BA9E	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400019629]

Coordinates

chr11:-:40689908..40695350

Molecular Weight (calculated)

50669.9 Da

IEP (calculated)

4.853

GRAVY (calculated)

-0.496

Length

453 amino acids

Sequence
(BLAST)

001: MKPQQQQQQQ QSLKRQLQFS SIKPVFGDYH RFSTEPVDCS SQEPPGIVVK TPPLKRKSAA ANYGQGVGDR NPASGYANVN SPIQTPVSGK NAQKVPRTSK
101: ARSASQAVTS NVGSPSGNNV TPVGPCRYDS SLGLLTKKFI NLIKHAEDGM LDLNKAADTL EVQKRRIYDI TNVLEGIGLI EKKLKNRIQW KGQGVSKPGE
201: ADESVASLQA EVEKLTVEEH RLDDQIREMQ ESLRDLSEDE NNQRWLFVTE DDIKSLPCFQ NETLIAIKAP HGTTLEVPDP DEAVDYPQRR YRIVLRSTMG
301: PIDVYLVSQF EEKFEEVNAV EAPPSVPSTS GLNEKATATL ATEENEEVDI GMEGKENQNV RSEVGTSQDF MTGIMKIVPD VDNEADYWLL SDADVSITDM
401: WRTECILLKS VFCYYQKDLT LYILILTLSM YYGRLHVVTF LGNLFCASKL NFY

Best Arabidopsis Sequence Match ( AT5G22220.2 )
(BLAST)

001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DESGPDWNQM ITFDQDHAGP SDNKILEQPQ TPSSPTPEES TATRSPTGS

Arabidopsis Description

E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.