Factsheet for PGSC0003DMT400009682

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400021592	cytosol, nucleus
PGSC0003DMT400030280
PGSC0003DMT400074806
PGSC0003DMT400079706

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47870.1	PGSC0003DMT400030280	AT3G12280.1	22921914
AT1G47870.1	PGSC0003DMT400079706	AT3G17760.1	20706207
AT1G47870.1	PGSC0003DMT400021592	AT5G03415.1	11891240
AT1G47870.1	PGSC0003DMT400021592	AT5G03415.1	20407024
AT1G47870.1	PGSC0003DMT400021592	AT5G03415.1	20407024
AT1G47870.1	PGSC0003DMT400074806	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g081350.2.1	Tomato	plastid	82.0	82.62
VIT_18s0001g14110.t01	Wine grape	nucleus	43.25	38.53
KRH61047	Soybean	cytosol, nucleus, plastid	34.0	38.31
Bra014096.1-P	Field mustard	nucleus	34.5	37.6
CDY16998	Canola	nucleus	34.5	37.6
CDY17797	Canola	nucleus	34.75	36.87
AT1G47870.1	Thale cress	nucleus, plastid	34.25	34.6
KRH51709	Soybean	nucleus	36.0	33.8
KRH07603	Soybean	cytosol	15.0	31.75
PGSC0003DMT400042347	Potato	plastid	37.25	31.17
PGSC0003DMT400015188	Potato	nucleus	33.25	30.02
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	33.25	29.36
GSMUA_Achr4P17950_001	Banana	nucleus	29.5	29.21
EES11756	Sorghum	plastid	35.0	28.57
Zm00001d004512_P001	Maize	plastid	33.0	28.21
TraesCS2D01G031400.1	Wheat	plastid	32.0	27.89
TraesCS2B01G043500.1	Wheat	plastid	31.75	27.49
TraesCS2A01G031800.1	Wheat	plastid	31.0	27.43
Os04t0112200-00	Rice	nucleus, plastid	31.5	26.25
HORVU2Hr1G004820.2	Barley	cytosol	7.75	24.8
PGSC0003DMT400013986	Potato	cytosol	5.75	23.47

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB
InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0000902	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005667	GO:GO:0005730	GO:GO:0006139	GO:GO:0006259	GO:GO:0006351	GO:GO:0006355
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987
GO:GO:0016043	GO:GO:0019748	GO:GO:0019760	GO:GO:0042023	GO:GO:0043565	GO:GO:0044212
GO:GO:0046982	GO:GO:0046983	GO:GO:0051301	GO:GO:0051782	InterPro:IPR036388	UniProt:M0ZWS1
PFAM:PF02319	PFAM:PF16421	EnsemblPlantsGene:PGSC0003DMG400003778	PGSC:PGSC0003DMG400003778	EnsemblPlants:PGSC0003DMT400009682	PANTHER:PTHR12081
PANTHER:PTHR12081:SF51	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI0002967B08	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	:	:	:	:	:

Description

E2F4,5 [Source:PGSC_GENE;Acc:PGSC0003DMG400003778]

Coordinates

chr4:-:70747783..70755086

Molecular Weight (calculated)

44381.3 Da

IEP (calculated)

6.586

GRAVY (calculated)

-0.534

Length

400 amino acids

Sequence
(BLAST)

001: MSTTAGENVD LNLSLATPLH LRSSSSPSAI AVTASSPYRS HPRFLSNLCS ESLSVVPGNP RPSATFGFAP KNEIEKSEEY NCGYGVSQRS PASNYSPLEQ
101: APSAHTKQPS KRKSSRDTIE ATKGINADLH DNLNLGVTYR YDNSLGLLTK KFIGLLQEAD DGTLDLNHSA EVLEVAKRRI YDITNVLEGI GLIEKTTKSR
201: IRWKGFRSTK SQGLDNQVST LKGEIGYLSA EDRRLDCCIR EKLEQIRTLE SDVNCQKRLF LTEEDIRRLP HFRDKTLIAI KAPYASSIEV PDPCEDVDLE
301: RQYKLILRST TGPIDLFLLS KQGRQHEDIT VKHEKPLDAV SAAKKMDDAC PSPVHPCSLD STASKLSGVH KIVPSHNSID DDYWLRSEEE VSATALWGIE

Best Arabidopsis Sequence Match ( AT1G47870.2 )
(BLAST)

001: MAATSNSGED PTLSYHHRSP FRFELLQSIS SSDPRYSSLT PSSTNRPFSV SQSLPNSQLS PLISPHWDDS YSQITQKVKS RKNHRIQLGS IANMSGGESI
101: DIAKVIVKQE SSPQNVKRVY NKSKGGTKLL KAGKRMANGE VQNGGLNGAS INCRYDSSLG LLTKKFVKLI QEAEDGTLDL NYCAVVLEVQ KRRIYDITNV
201: LEGIGLIEKT TKNHIRWKGA DNLGQKDLGD QISRLKSEVE SMQSEESRLD DLIRERQEAL RSLEEDDYCR RYMFMTEEDI TSLPRFQNQT LLAIKAPTAS
301: YIEVPDPDEM SFPQQYRMVI RSRMGPIDVY LLSKYKGDSA ETSDKLGNES DQKAPVGVDT PSLKIVTSDT DLKADYWFES DAEVSLTDLW SNFNS

Arabidopsis Description

E2FCE2FC [Source:UniProtKB/TrEMBL;Acc:A0A178WB46]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.