CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91226
EER92677
EES11052
EES11053
EES11054
EES12248
EES14166
EES17294
KXG21076
KXG26019
KXG26629
KXG26630
KXG29757
OQU81862
OQU83580
OQU87155

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47870.1	EES14166	AT3G12280.1	22921914
AT1G47870.1	KXG21076	AT3G12280.1	22921914
AT1G47870.1	KXG26019	AT3G12280.1	22921914
AT1G47870.1	OQU83580	AT3G12280.1	22921914
AT1G47870.1	EES12248	AT3G17760.1	20706207
AT1G47870.1	EER91226	AT4G37630.1	20407024
AT1G47870.1	EER92677	AT4G37630.1	20407024
AT1G47870.1	EES17294	AT4G37630.1	20407024
AT1G47870.1	EES11052	AT5G25460.1	20706207
AT1G47870.1	EES11053	AT5G25460.1	20706207
AT1G47870.1	EES11054	AT5G25460.1	20706207
AT1G47870.1	KXG26629	AT5G25460.1	20706207
AT1G47870.1	KXG26630	AT5G25460.1	20706207
AT1G47870.1	KXG29757	AT5G25460.1	20706207
AT1G47870.1	OQU81862	AT5G25460.1	20706207
AT1G47870.1	OQU87155	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004512_P001	Maize	plastid	68.98	72.22
Os04t0112200-00	Rice	nucleus, plastid	50.2	51.25
TraesCS2B01G043500.1	Wheat	plastid	47.55	50.43
TraesCS2D01G031400.1	Wheat	plastid	46.73	49.89
TraesCS2A01G031800.1	Wheat	plastid	43.88	47.57
HORVU2Hr1G004820.2	Barley	cytosol	11.02	43.2
Bra014096.1-P	Field mustard	nucleus	27.55	36.78
CDY16998	Canola	nucleus	27.55	36.78
CDY17797	Canola	nucleus	28.16	36.6
KRH61047	Soybean	cytosol, nucleus, plastid	26.33	36.34
OQU78759	Sorghum	plastid	27.14	35.19
PGSC0003DMT400009682	Potato	plastid	28.57	35.0
GSMUA_Achr4P17950_001	Banana	nucleus	28.78	34.9
AT1G47870.1	Thale cress	nucleus, plastid	27.76	34.34
Solyc04g081350.2.1	Tomato	plastid	26.73	33.0
KRH51709	Soybean	nucleus	28.57	32.86
VIT_18s0001g14110.t01	Wine grape	nucleus	29.59	32.29
OQU81541	Sorghum	nucleus	28.57	30.63
OQU85083	Sorghum	mitochondrion, plastid	28.98	30.15
KRH07603	Soybean	cytosol	10.82	28.04

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	UniProt:C5YBP5	ncoils:Coil	InterPro:E2F
InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	EnsemblPlants:EES11756	ProteinID:EES11756	ProteinID:EES11756.2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046983	InterPro:IPR036388	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF49
SMART:SM01372	EnsemblPlantsGene:SORBI_3006G008800	SUPFAM:SSF101447	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI00081AE0BB
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:1302649..1307415

Molecular Weight (calculated)

53065.6 Da

IEP (calculated)

4.746

GRAVY (calculated)

-0.635

Length

490 amino acids

Sequence
(BLAST)

001: MDGGSSSLPL PQPPPPPPPQ VYLRRGSSVP PPGTPVQAPP RVQLFRAPAT PIPIFSSKPR AAVRSPIPPP PPPPPPPPPP AAAALAASAP APAPAAATAQ
101: APPLPPPPTS ASTDQPPPQQ AGTMAPPPAP EPAGKPNAQL NEQNSGEYSQ SENNMVETAQ GHDKETTPGP VKAIKRIKKV KSSKHNLGNT NSGAIEGDAD
201: PSLSSLNHCR YDNSLSLLTK KFINLLQGAE DGTLDLNKAA ETLEVQKRRM YDITNVLEGV HLIEKGLKNM IRWKGFDMSK PKEIECQISS LKEELESLYD
301: EEFRLDDEIR EAKEKLQTLT LDEDKRKLLY LLKEDINKIP HFQGSTLIAI NAPHGTCLEV PDPNADQDMY GNLGLQEQHY KIVLRSSMGP IDCYLISDRQ
401: EIFNPDQLAA ADRLEPAVAT DSSQALQQMD CDPTQALEKE WGNGGCMHTT EPSRKQENGI LRIVPSDSDV DADYWLASGV DVSMTDEWGT

Best Arabidopsis Sequence Match ( AT1G47870.1 )
(BLAST)

001: MAATSNSGED PTLSYHHRSP FRFELLQSIS SSDPRYSSLT PSSTNRPFSV SQSLPNSQLS PLISPHWDDS YSQITQKVQK SRKNHRIQLG SIANMSGGES
101: IDIAKVIVKQ ESSPQNVKRV YNKSKGGTKL LKAGKRMANG EVQNGGLNGA SINCRYDSSL GLLTKKFVKL IQEAEDGTLD LNYCAVVLEV QKRRIYDITN
201: VLEGIGLIEK TTKNHIRWKG ADNLGQKDLG DQISRLKSEV ESMQSEESRL DDLIRERQEA LRSLEEDDYC RRYMFMTEED ITSLPRFQNQ TLLAIKAPTA
301: SYIEVPDPDE MSFPQQYRMV IRSRMGPIDV YLLSKYKGDS AETSDKLGNE SDQKAPVGVD TPSLKIVTSD TDLKADYWFE SDAEVSLTDL WSNFNS

Arabidopsis Description

E2FCE2FC [Source:UniProtKB/TrEMBL;Acc:A0A178WB46]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.