CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05109
KRH09492
KRH13310
KRH16010
KRH20664
KRH27723	cytosol, nucleus
KRH28363
KRH38971
KRH52488
KRH52489
KRH63701
KRH77118
KRH77687	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47870.1	KRH13310	AT3G12280.1	22921914
AT1G47870.1	KRH20664	AT3G12280.1	22921914
AT1G47870.1	KRH63701	AT3G12280.1	22921914
AT1G47870.1	KRH09492	AT3G17760.1	20706207
AT1G47870.1	KRH38971	AT3G17760.1	20706207
AT1G47870.1	KRH28363	AT4G37630.1	20407024
AT1G47870.1	KRH77118	AT4G37630.1	20407024
AT1G47870.1	KRH27723	AT5G03415.1	11891240
AT1G47870.1	KRH77687	AT5G03415.1	11891240
AT1G47870.1	KRH27723	AT5G03415.1	20407024
AT1G47870.1	KRH77687	AT5G03415.1	20407024
AT1G47870.1	KRH27723	AT5G03415.1	20407024
AT1G47870.1	KRH77687	AT5G03415.1	20407024
AT1G47870.1	KRH05109	AT5G25460.1	20706207
AT1G47870.1	KRH16010	AT5G25460.1	20706207
AT1G47870.1	KRH52488	AT5G25460.1	20706207
AT1G47870.1	KRH52489	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51709	Soybean	nucleus	69.3	57.75
KRH07603	Soybean	cytosol	26.76	50.26
Bra014096.1-P	Field mustard	nucleus	41.69	40.33
CDY16998	Canola	nucleus	41.69	40.33
VIT_18s0001g14110.t01	Wine grape	nucleus	49.86	39.42
CDY17797	Canola	nucleus	40.56	38.2
AT1G47870.1	Thale cress	nucleus, plastid	42.54	38.13
Solyc04g081350.2.1	Tomato	plastid	38.03	34.01
PGSC0003DMT400009682	Potato	plastid	38.31	34.0
GSMUA_Achr4P17950_001	Banana	nucleus	38.31	33.66
KRH25298	Soybean	nucleus	38.59	30.44
KRH30372	Soybean	nucleus	39.44	30.43
KRH72218	Soybean	nucleus	40.0	30.34
KRH32815	Soybean	nucleus	38.31	29.18
TraesCS2D01G031400.1	Wheat	plastid	35.49	27.45
TraesCS2A01G031800.1	Wheat	plastid	34.65	27.21
Os04t0112200-00	Rice	nucleus, plastid	36.62	27.08
TraesCS2B01G043500.1	Wheat	plastid	34.37	26.41
EES11756	Sorghum	plastid	36.34	26.33
Zm00001d004512_P001	Maize	plastid	34.65	26.28
KRH26172	Soybean	nucleus	13.52	25.53
HORVU2Hr1G004820.2	Barley	cytosol	7.89	22.4

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100811650	MapMan:13.1.2.2	MapMan:15.5.10	UniProt:A0A0R0K7P3	EMBL:ACUP02002150
ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	EnsemblPlantsGene:GLYMA_04G024800
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046983	InterPro:IPR036388	EnsemblPlants:KRH61047	ProteinID:KRH61047	ProteinID:KRH61047.1	ProteinID:KRH61048.1
PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF51	SMART:SM01372	SUPFAM:SSF144074
SUPFAM:SSF46785	UniParc:UPI000233A810	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:1974490..1978154

Molecular Weight (calculated)

40260.4 Da

IEP (calculated)

5.364

GRAVY (calculated)

-0.725

Length

355 amino acids

Sequence
(BLAST)

001: MGQRYENNVF KSHISNIEAA PGMTQTVHLP PPLQTDPTIR GKQNGKPKGS RNAKSAAHRP YADSTNSTAV NNCRYDSSLG LLTKKFVSLI QDAKDGTLDL
101: NRTAEILEVQ KRRIYDITNV LEGVGLIEKT SKNHIKWKGC DGLGPRELED QVNSLKAEVD SLYAEECKLD DCIRKKQELL RNLEESESSQ KYLFITKEDI
201: LGLPCFQNQE IIAIKAPKAS SIEVPDPDEE LGFRQRQYKM IVRSAIGPIY LYLLRYFSAV TLQPKVCKDD HKFEDDSAKP MKLTNPSWNS DLYRKRGVGL
301: LESQNDENNP SERFSLQGSQ AFGIQEITPT DFEMEDDYWF QSDPGVSQTE LWGKE

Best Arabidopsis Sequence Match ( AT1G47870.1 )
(BLAST)

001: MAATSNSGED PTLSYHHRSP FRFELLQSIS SSDPRYSSLT PSSTNRPFSV SQSLPNSQLS PLISPHWDDS YSQITQKVQK SRKNHRIQLG SIANMSGGES
101: IDIAKVIVKQ ESSPQNVKRV YNKSKGGTKL LKAGKRMANG EVQNGGLNGA SINCRYDSSL GLLTKKFVKL IQEAEDGTLD LNYCAVVLEV QKRRIYDITN
201: VLEGIGLIEK TTKNHIRWKG ADNLGQKDLG DQISRLKSEV ESMQSEESRL DDLIRERQEA LRSLEEDDYC RRYMFMTEED ITSLPRFQNQ TLLAIKAPTA
301: SYIEVPDPDE MSFPQQYRMV IRSRMGPIDV YLLSKYKGDS AETSDKLGNE SDQKAPVGVD TPSLKIVTSD TDLKADYWFE SDAEVSLTDL WSNFNS

Arabidopsis Description

E2FCE2FC [Source:UniProtKB/TrEMBL;Acc:A0A178WB46]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.