CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92697
KRG96999
KRH01550
KRH03906
KRH05060	cytosol, nucleus
KRH07603
KRH12557
KRH13310
KRH16044	cytosol, nucleus
KRH20664
KRH28995
KRH34103
KRH37507
KRH51709
KRH52524	cytosol, nucleus
KRH56424
KRH57185
KRH57190
KRH61047
KRH61850	cytosol, nucleus
KRH62487
KRH63701
KRH68751
KRH70557

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03415.1	KRH01550	AT1G10840.1	20706207
AT5G03415.1	KRH70557	AT1G10840.1	20706207
AT5G03415.1	KRH07603	AT1G47870.1	11891240
AT5G03415.1	KRH51709	AT1G47870.1	11891240
AT5G03415.1	KRH61047	AT1G47870.1	11891240
AT5G03415.1	KRH56424	AT1G71380.1	20706207
AT5G03415.1	KRH62487	AT1G71380.1	20706207
AT5G03415.1	KRH12557	AT2G05830.1	20706207
AT5G03415.1	KRH37507	AT2G05830.1	20706207
AT5G03415.1	KRG92697	AT3G04620.1	20706207
AT5G03415.1	KRG96999	AT3G04620.1	20706207
AT5G03415.1	KRH34103	AT3G04620.1	20706207
AT5G03415.1	KRH68751	AT3G04620.1	20706207
AT5G03415.1	KRH13310	AT3G12280.1	20706207
AT5G03415.1	KRH20664	AT3G12280.1	20706207
AT5G03415.1	KRH63701	AT3G12280.1	20706207
AT5G03415.1	KRH28995	AT4G19210.1	20706207
AT5G03415.1	KRH03906	AT4G24820.1	20706207
AT5G03415.1	KRH57185	AT4G24820.1	20706207
AT5G03415.1	KRH57190	AT4G24820.1	20706207
AT5G03415.1	KRH05060	AT5G11300.1	20407024
AT5G03415.1	KRH16044	AT5G11300.1	20407024
AT5G03415.1	KRH52524	AT5G11300.1	20407024
AT5G03415.1	KRH61850	AT5G11300.1	20407024
AT5G03415.1	KRH05060	AT5G11300.1	20407024
AT5G03415.1	KRH16044	AT5G11300.1	20407024
AT5G03415.1	KRH52524	AT5G11300.1	20407024
AT5G03415.1	KRH61850	AT5G11300.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77687	Soybean	nucleus	96.44	96.15
KRH24035	Soybean	nucleus	73.89	75.0
KRH29008	Soybean	nucleus	73.89	74.33
Solyc10g078430.1.1	Tomato	nucleus	75.07	71.47
PGSC0003DMT400021592	Potato	nucleus	74.78	70.79
CDX80867	Canola	nucleus	60.53	63.75
CDY44365	Canola	nucleus	63.2	61.74
AT5G03415.1	Thale cress	nucleus	70.33	61.56
GSMUA_Achr5P12500_001	Banana	mitochondrion, nucleus	27.0	59.09
CDY11252	Canola	nucleus	60.83	56.79
Bra005763.1-P	Field mustard	nucleus	61.42	56.71

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	EntrezGene:100797603	MapMan:13.1.2.3	MapMan:15.5.10	EMBL:ACUP02006733
ncoils:Coil	InterPro:E2F-DP_heterodim	InterPro:E2F_WHTH_DNA-bd_dom	EnsemblPlantsGene:GLYMA_11G010800	GO:GO:0000981	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0006357	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
UniProt:I1LFZ7	InterPro:IPR036388	InterPro:IPR038168	EnsemblPlants:KRH27723	ProteinID:KRH27723	ProteinID:KRH27723.1
ProteinID:KRH27724.1	ProteinID:KRH27725.1	PFAM:PF02319	PFAM:PF08781	PIRSF:PIRSF009404	PANTHER:PTHR12548
PANTHER:PTHR12548:SF15	SMART:SM01138	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	InterPro:TF_DP_C_sf
InterPro:Transc_factor_DP_C	InterPro:Transcrpt_fac_DP	UniParc:UPI0001BA8F26	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr11:-:760054..766199

Molecular Weight (calculated)

37552.9 Da

IEP (calculated)

5.716

GRAVY (calculated)

-0.841

Length

337 amino acids

Sequence
(BLAST)

001: MGTQPQQTFR EEEEEEMQGH GTTMSGQSMS TSRSVGSPSS RSEQTMATPA SDSTFLRLNH LDIHGDDAGS QGTVAKKKKR GQRAVGGDKS GRGLRQFSMK
101: VCEKVESKGR TTYNEVADEL VAEFADPING VSTPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW KGLPRTSLSD IEELKSERLG LRNRIEKKAA
201: YLQELEEQYI GLQKLIQRNE QLYSSGNAPN GGVSLPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNYVLKAM KFCERSQNDN TTDNSTDGGE
301: GSSIYAQVPT SVSNPPNRPP SSPPLPGILK ARVKNEH

Best Arabidopsis Sequence Match ( AT5G03415.1 )
(BLAST)

001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN

Arabidopsis Description

DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.