Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX69768 | cytosol, nucleus |
| CDX73827 | |
| CDX74179 | |
| CDX76485 | |
| CDX78930 | |
| CDX79500 | |
| CDX96319 | |
| CDX97090 | cytosol, nucleus |
| CDX97503 | |
| CDX97915 | |
| CDX98609 | |
| CDX99388 | |
| CDY00765 | |
| CDY01588 | |
| CDY03686 | |
| CDY03687 | |
| CDY04295 | |
| CDY05197 | |
| CDY08440 | |
| CDY09282 | |
| CDY09484 | |
| CDY16998 | |
| CDY17797 | |
| CDY19324 | |
| CDY20600 | |
| CDY20601 | |
| CDY20970 | |
| CDY21118 | |
| CDY23627 | |
| CDY28657 | |
| CDY30010 | |
| CDY33397 | |
| CDY34315 | |
| CDY34673 | |
| CDY34854 | |
| CDY37936 | |
| CDY37939 | |
| CDY40664 | |
| CDY41887 | |
| CDY42141 | |
| CDY50559 | |
| CDY50744 | |
| CDY52391 | |
| CDY52614 | |
| CDY53532 | |
| CDY66787 | |
| CDY68615 | |
| CDY70356 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80867 | Canola | nucleus | 62.61 | 67.5 |
| KRH27723 | Soybean | nucleus | 61.74 | 63.2 |
| KRH77687 | Soybean | nucleus | 61.45 | 62.72 |
| AT5G03415.1 | Thale cress | nucleus | 66.38 | 59.48 |
| CDY11252 | Canola | nucleus | 61.74 | 59.0 |
| Solyc10g078430.1.1 | Tomato | nucleus | 59.13 | 57.63 |
| PGSC0003DMT400021592 | Potato | nucleus | 59.13 | 57.3 |
| VIT_08s0040g01300.t01 | Wine grape | nucleus | 16.81 | 50.43 |
| GSMUA_Achr5P12500_001 | Banana | mitochondrion, nucleus | 21.74 | 48.7 |
| VIT_08s0040g01330.t01 | Wine grape | nucleus | 47.25 | 45.79 |
| CDY40359 | Canola | nucleus | 33.04 | 39.45 |
| CDY10450 | Canola | nucleus | 33.04 | 39.04 |
| CDX80823 | Canola | nucleus | 31.88 | 38.6 |
| CDY55548 | Canola | nucleus | 31.88 | 38.46 |
| CDY72556 | Canola | cytosol | 13.91 | 36.09 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.20.140.80 | MapMan:13.1.2.3 | MapMan:15.5.10 | GO:A0A078I0E9 | UniProt:A0A078I0E9 |
| EnsemblPlants:CDY44365 | ProteinID:CDY44365 | ProteinID:CDY44365.1 | InterPro:E2F-DP_heterodim | InterPro:E2F_WHTH_DNA-bd_dom | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00080030001 |
| InterPro:IPR036388 | InterPro:IPR038168 | PFAM:PF02319 | PFAM:PF08781 | PIRSF:PIRSF009404 | PANTHER:PTHR12548 |
| PANTHER:PTHR12548:SF15 | SMART:SM01138 | SMART:SM01372 | SUPFAM:SSF144074 | SUPFAM:SSF46785 | InterPro:TF_DP_C_sf |
| InterPro:Transc_factor_DP_C | InterPro:Transcrpt_fac_DP | UniParc:UPI0004EE7091 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
BnaC02g03120DBnaC02g03120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0E9]
Coordinates
chrLK032587:+:150918..153158
Molecular Weight (calculated)
38221.7 Da
IEP (calculated)
8.698
GRAVY (calculated)
-0.834
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTTTTTGSN SNHNNNPSTS GSVGSPSTTV ATTSASDSAF IQLNSLDIQG DDAASQGSGK KKKKKRGQRA SGPDKTGRGL RQFSMKVCEK VESKGRTTYN
101: EVADELVAEF ALPNNDGTSL PDQQQYDEKN IRRRVYDALN VLMAMDIICK DKKEIQWRGL PRKGLALFVC LCSKAERLSL RNRIEKKTAY SKELEEQYVG
201: LQNLIRRNEH LYSSENAPSG GVTLPFILVQ TRPHATVEVE ISEDMQLVHF DFNSTPFELH DDTFVLKTMK FCDQPPRLNN GHSNNHQKTS QEGPSSTYPT
301: PPMHQSHPQP PQHQLHSQPV TNNNHVASSP VTSQGSIKSS VKPEN
101: EVADELVAEF ALPNNDGTSL PDQQQYDEKN IRRRVYDALN VLMAMDIICK DKKEIQWRGL PRKGLALFVC LCSKAERLSL RNRIEKKTAY SKELEEQYVG
201: LQNLIRRNEH LYSSENAPSG GVTLPFILVQ TRPHATVEVE ISEDMQLVHF DFNSTPFELH DDTFVLKTMK FCDQPPRLNN GHSNNHQKTS QEGPSSTYPT
301: PPMHQSHPQP PQHQLHSQPV TNNNHVASSP VTSQGSIKSS VKPEN
001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN
Arabidopsis Description
DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.