CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009586.1-P	Field mustard	nucleus	98.62	98.28
CDY10450	Canola	nucleus	96.19	95.21
AT5G02470.3	Thale cress	nucleus	89.97	89.04
CDY55548	Canola	nucleus	83.39	84.27
CDX80823	Canola	nucleus	83.05	84.21
CDY72556	Canola	cytosol	37.37	81.2
Solyc09g010670.2.1	Tomato	nucleus	37.72	55.9
PGSC0003DMT400023036	Potato	cytosol, nucleus, plastid	40.48	45.0
VIT_08s0007g00170.t01	Wine grape	nucleus	46.37	35.45
CDX80867	Canola	nucleus	38.06	34.38
GSMUA_Achr3P16470_001	Banana	nucleus	32.53	33.69
CDY44365	Canola	nucleus	39.45	33.04
Zm00001d011597_P002	Maize	nucleus	28.03	32.14
TraesCS3B01G302900.1	Wheat	nucleus, plastid	28.37	31.42
TraesCS3D01G268600.1	Wheat	nucleus, plastid	28.37	31.42
TraesCS3A01G268500.1	Wheat	nucleus, plastid	28.03	31.03
CDY11252	Canola	nucleus	37.72	30.19
Os01t0678700-01	Rice	cytosol	29.07	28.57
OQU87325	Sorghum	plastid	29.41	28.52
HORVU3Hr1G062470.2	Barley	mitochondrion	15.57	27.27
HORVU7Hr1G037090.2	Barley	plastid	20.76	20.2

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	GO:A0A078HSW0	UniProt:A0A078HSW0
EnsemblPlants:CDY40359	ProteinID:CDY40359	ProteinID:CDY40359.1	ncoils:Coil	InterPro:E2F-DP_heterodim	InterPro:E2F_WHTH_DNA-bd_dom
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00069548001	InterPro:IPR036388	InterPro:IPR038168	PFAM:PF02319	PFAM:PF08781	PIRSF:PIRSF009404
PANTHER:PTHR12548	PANTHER:PTHR12548:SF14	SMART:SM01138	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785
InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C	InterPro:Transcrpt_fac_DP	UniParc:UPI0004EDE500	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

BnaA10g27090DBnaA10g27090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSW0]

Coordinates

chrLK032468:-:255311..257771

Molecular Weight (calculated)

32775.1 Da

IEP (calculated)

8.015

GRAVY (calculated)

-0.644

Length

289 amino acids

Sequence
(BLAST)

001: MEMDLFVTPE KQRNHPPSVS LGKTPVRRKL IVDDDNEVVS EKKGQSRTSG GGLRQFSVMV CQKLEAKKIT TYKEVADEII SDFATIKQNA EKPLNDNEYN
101: EKNIRRRVYD ALNVFMALDI IARDKKEIRW KGLPITCKKD VEEVKMDRNK IMNSVQKKAA FLKELREKVS SLESLMSRNK EMVVKTEGPA EGFTLPFILL
201: ETNPHAVVEI EISEDMQLVH LDFNNTPFSV HDDAYILKLM QEHKQQQQHR VSSPSSTHQH SSAHSSSSSC IASGTSGPVC WNSGTNDTR

Best Arabidopsis Sequence Match ( AT5G02470.3 )
(BLAST)

001: MSMEMELFVT PEKQRQHPSV SVEKTPVRRK LIVDDDSEIG SEKKGQSRTS GGGLRQFSVM VCQKLEAKKI TTYKEVADEI ISDFATIKQN AEKPLNENEY
101: NEKNIRRRVY DALNVFMALD IIARDKKEIR WKGLPITCKK DVEEVKMDRN KVMSSVQKKA AFLKELREKV SSLESLMSRN QEMVVKTQGP AEGFTLPFIL
201: LETNPHAVVE IEISEDMQLV HLDFNSTPFS VHDDAYILKL MQEQKQEQNR VSSSSSTHHQ SQHSSAHSSS SSCIASGTSG PVCWNSGSID TR

Arabidopsis Description

DPADPA [Source:UniProtKB/TrEMBL;Acc:A0A178ULD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.