Factsheet for Solyc09g010670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023036	Potato	cytosol, nucleus, plastid	91.79	68.85
CDY72556	Canola	cytosol	28.72	42.11
Bra005726.1-P	Field mustard	nucleus	56.41	38.87
CDY55548	Canola	nucleus	55.9	38.11
CDX80823	Canola	nucleus	55.38	37.89
CDY40359	Canola	nucleus	55.9	37.72
CDY10450	Canola	nucleus	56.41	37.67
AT5G02470.3	Thale cress	nucleus	56.41	37.67
Bra009586.1-P	Field mustard	nucleus	55.9	37.59
GSMUA_Achr3P16470_001	Banana	nucleus	49.23	34.41
VIT_08s0007g00170.t01	Wine grape	nucleus	65.13	33.6
Zm00001d011597_P002	Maize	nucleus	43.08	33.33
TraesCS3A01G268500.1	Wheat	nucleus, plastid	44.62	33.33
Solyc10g078430.1.1	Tomato	nucleus	60.51	33.33
TraesCS3B01G302900.1	Wheat	nucleus, plastid	44.1	32.95
TraesCS3D01G268600.1	Wheat	nucleus, plastid	43.59	32.57
Os01t0678700-01	Rice	cytosol	43.59	28.91
OQU87325	Sorghum	plastid	42.05	27.52
HORVU3Hr1G062470.2	Barley	mitochondrion	19.49	23.03
HORVU7Hr1G037090.2	Barley	plastid	34.87	22.9

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	ncoils:Coil	InterPro:E2F-DP_heterodim
InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0000981	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR036388	InterPro:IPR038168	UniProt:K4CR94
PFAM:PF02319	PFAM:PF08781	PANTHER:PTHR12548	PANTHER:PTHR12548:SF14	SMART:SM01138	SMART:SM01372
SUPFAM:SSF144074	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc09g010670.2	EnsemblPlants:Solyc09g010670.2.1	InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C
InterPro:Transcrpt_fac_DP	UniParc:UPI000276AD23	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:	:

Description

Transcription factor-like protein DPA [Source:Projected from Arabidopsis thaliana (AT5G02470) UniProtKB/Swiss-Prot;Acc:Q9FNY3]

Coordinates

chr9:+:3990313..3995331

Molecular Weight (calculated)

22224.5 Da

IEP (calculated)

4.900

GRAVY (calculated)

-0.505

Length

195 amino acids

Sequence
(BLAST)

001: MVCKKVEDKG RITYSEVADE IIAELMTMEN SSSVPLNESD EKNIRRRVYD SLNVLMALDV IERDRKEIRW KGLPNSDARD MEETKKGHAE LLAKIGKKAA
101: YLKDLEEQLA SLQNLKLRNE QSCKSTNGPS QGFSLPFILV QTAPHATVEV EISEDMQLVH FDFNSVPFSL HDDAYVLKLM RNYELLESES VSRTS

Best Arabidopsis Sequence Match ( AT5G02470.3 )
(BLAST)

001: MSMEMELFVT PEKQRQHPSV SVEKTPVRRK LIVDDDSEIG SEKKGQSRTS GGGLRQFSVM VCQKLEAKKI TTYKEVADEI ISDFATIKQN AEKPLNENEY
101: NEKNIRRRVY DALNVFMALD IIARDKKEIR WKGLPITCKK DVEEVKMDRN KVMSSVQKKA AFLKELREKV SSLESLMSRN QEMVVKTQGP AEGFTLPFIL
201: LETNPHAVVE IEISEDMQLV HLDFNSTPFS VHDDAYILKL MQEQKQEQNR VSSSSSTHHQ SQHSSAHSSS SSCIASGTSG PVCWNSGSID TR

Arabidopsis Description

DPADPA [Source:UniProtKB/TrEMBL;Acc:A0A178ULD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.