CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011597_P002	Maize	nucleus	68.12	80.56
Os01t0678700-01	Rice	cytosol	56.38	57.14
TraesCS3B01G302900.1	Wheat	nucleus, plastid	48.99	55.94
TraesCS3D01G268600.1	Wheat	nucleus, plastid	48.32	55.17
TraesCS3A01G268500.1	Wheat	nucleus, plastid	48.32	55.17
HORVU3Hr1G062470.2	Barley	mitochondrion	25.84	46.67
Solyc09g010670.2.1	Tomato	nucleus	27.52	42.05
GSMUA_Achr3P16470_001	Banana	nucleus	36.91	39.43
PGSC0003DMT400023036	Potato	cytosol, nucleus, plastid	30.87	35.38
HORVU7Hr1G037090.2	Barley	plastid	35.23	35.35
KXG21054	Sorghum	nucleus	31.21	32.18
CDX80823	Canola	nucleus	29.53	30.88
EER91566	Sorghum	nucleus	34.9	30.59
CDY55548	Canola	nucleus	28.52	29.72
CDY40359	Canola	nucleus	28.52	29.41
Bra005726.1-P	Field mustard	nucleus	27.85	29.33
Bra009586.1-P	Field mustard	nucleus	28.52	29.31
CDY10450	Canola	nucleus	28.52	29.11
AT5G02470.3	Thale cress	nucleus	28.19	28.77
EES08854	Sorghum	nucleus	31.54	28.14
EER95490	Sorghum	nucleus	36.24	27.55
VIT_08s0007g00170.t01	Wine grape	nucleus	34.9	27.51
CDY72556	Canola	cytosol	11.41	25.56

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	UniProt:A0A1W0VYY6	ncoils:Coil
InterPro:E2F-DP_heterodim	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR036388	InterPro:IPR038168	EnsemblPlants:OQU87325	ProteinID:OQU87325
ProteinID:OQU87325.1	PFAM:PF02319	PFAM:PF08781	PANTHER:PTHR12548	PANTHER:PTHR12548:SF14	SMART:SM01138
SMART:SM01372	EnsemblPlantsGene:SORBI_3003G256300	SUPFAM:SSF144074	SUPFAM:SSF46785	InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C
InterPro:Transcrpt_fac_DP	UniParc:UPI0009DC884E	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:59447602..59452890

Molecular Weight (calculated)

33235.9 Da

IEP (calculated)

8.643

GRAVY (calculated)

-0.488

Length

298 amino acids

Sequence
(BLAST)

001: MYTPEYLCIP GPPYLGASCT PKSQSPSPLF SVPLLGDRES TVMAPPCGDA AAAAELTSTR ISEGAGLPPL PPGRGSVGGN AGEGEEEGDT NKKARKEKAG
101: TQRIAGWGLR EFSKIVSKKV ESKGRTTYNE VADEICGELK LTLIGQEFDE KNIRRRVYDA FNVLIALRVI TKDQKEIKWM GLSNFQYEYI KLEETRKELM
201: IRVKNKKKLL QEIERQFDDL QNIKFRNQLL QRPAESANGI CLPFLLVKAS RKARVEIEIS ENSKFAGFDF NCTPFTLHDD VSILEAIRCN NNSIKRAS

Best Arabidopsis Sequence Match ( AT5G03415.1 )
(BLAST)

001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN

Arabidopsis Description

DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.