Factsheet for TraesCS3D01G268600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G268500.1	Wheat	nucleus, plastid	98.08	98.08
TraesCS3B01G302900.1	Wheat	nucleus, plastid	96.55	96.55
Zm00001d011597_P002	Maize	nucleus	58.62	60.71
Os01t0678700-01	Rice	cytosol	66.28	58.84
OQU87325	Sorghum	plastid	55.17	48.32
HORVU7Hr1G037090.2	Barley	plastid	50.19	44.11
Solyc09g010670.2.1	Tomato	nucleus	32.57	43.59
GSMUA_Achr3P16470_001	Banana	nucleus	40.61	37.99
PGSC0003DMT400023036	Potato	cytosol, nucleus, plastid	34.48	34.62
CDX80823	Canola	nucleus	31.8	29.12
CDY55548	Canola	nucleus	31.8	29.02
Bra005726.1-P	Field mustard	nucleus	31.42	28.98
AT5G02470.3	Thale cress	nucleus	31.8	28.42
CDY40359	Canola	nucleus	31.42	28.37
Bra009586.1-P	Field mustard	nucleus	31.42	28.28
CDY10450	Canola	nucleus	31.42	28.08
VIT_08s0007g00170.t01	Wine grape	nucleus	39.46	27.25
TraesCS1D01G139300.1	Wheat	plastid	36.02	27.01
TraesCS4D01G268100.2	Wheat	nucleus	37.55	25.19
CDY72556	Canola	cytosol	12.64	24.81

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	ncoils:Coil	InterPro:E2F-DP_heterodim
InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR036388	InterPro:IPR038168	PFAM:PF02319	PFAM:PF08781
PIRSF:PIRSF009404	PANTHER:PTHR12548	PANTHER:PTHR12548:SF14	SMART:SM01138	SMART:SM01372	SUPFAM:SSF144074
SUPFAM:SSF46785	InterPro:TF_DP_C_sf	EnsemblPlantsGene:TraesCS3D01G268600	EnsemblPlants:TraesCS3D01G268600.1	InterPro:Transc_factor_DP_C	InterPro:Transcrpt_fac_DP
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	TIGR:cd14458	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:+:373318177..373325776

Molecular Weight (calculated)

29500.5 Da

IEP (calculated)

10.098

GRAVY (calculated)

-0.575

Length

261 amino acids

Sequence
(BLAST)

001: MAPPRGGAAA AAPAALDLTG VHILEASSVP PLPERGGNAV QRKEAVDPDK DRKKEKAAAP RITGWGLREY SKIVCEKVEA KGRTTYNEVA DEIYSELKSM
101: AHIGQGFDEK NIRRRVYDAF NVLIALRVIA KEKKEIRWMG LSNYRYEKIK KLEEVRKEHV NKIRNKKALL QEIEKQFDDL QNIMLRNQTL ESSAENVNGI
201: RLPFVLVKTS RKARVEIEIS DDSKFAHFEF NGAPFTLHDD LSILEGIRRN SIGRAGRATL H

Best Arabidopsis Sequence Match ( AT5G02470.1 )
(BLAST)

001: MSMEMELFVT PEKQRQHPSV SVEKTPVRRK LIVDDDSEIG SEKKGQSRTS GGGLRQFSVM VCQKLEAKKI TTYKEVADEI ISDFATIKQN AEKPLNENEY
101: NEKNIRRRVY DALNVFMALD IIARDKKEIR WKGLPITCKK DVEEVKMDRN KVMSSVQKKA AFLKELREKV SSLESLMSRN QEMVVKTQGP AEGFTLPFIL
201: LETNPHAVVE IEISEDMQLV HLDFNSTPFS VHDDAYILKL MQEQKQEQNR VSSSSSTHHQ SQHSSAHSSS SSCIASGTSG PVCWNSGSID TR

Arabidopsis Description

DPADPA [Source:UniProtKB/TrEMBL;Acc:A0A178ULD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.