Factsheet for GSMUA_Achr3P16470_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010670.2.1	Tomato	nucleus	34.41	49.23
Zm00001d011597_P002	Maize	nucleus	37.99	42.06
PGSC0003DMT400023036	Potato	cytosol, nucleus, plastid	39.07	41.92
TraesCS3A01G268500.1	Wheat	nucleus, plastid	38.35	41.0
TraesCS3D01G268600.1	Wheat	nucleus, plastid	37.99	40.61
TraesCS3B01G302900.1	Wheat	nucleus, plastid	37.99	40.61
Os01t0678700-01	Rice	cytosol	39.07	37.07
HORVU3Hr1G062470.2	Barley	mitochondrion	21.86	36.97
OQU87325	Sorghum	plastid	39.43	36.91
GSMUA_Achr1P00430_001	Banana	nucleus	41.58	33.53
CDY55548	Canola	nucleus	34.05	33.22
Bra005726.1-P	Field mustard	nucleus	33.69	33.22
CDY72556	Canola	cytosol	15.77	33.08
CDX80823	Canola	nucleus	33.69	32.98
AT5G02470.3	Thale cress	nucleus	34.05	32.53
CDY40359	Canola	nucleus	33.69	32.53
Bra009586.1-P	Field mustard	nucleus	33.69	32.41
CDY10450	Canola	nucleus	33.33	31.85
VIT_08s0007g00170.t01	Wine grape	nucleus	42.65	31.48
GSMUA_Achr5P12510_001	Banana	nucleus	25.81	29.51
GSMUA_Achr5P12500_001	Banana	mitochondrion, nucleus	15.77	28.57
HORVU7Hr1G037090.2	Barley	plastid	27.24	25.59

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	ncoils:Coil	InterPro:E2F-DP_heterodim
InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G16470_001	EnsemblPlants:GSMUA_Achr3P16470_001	EnsemblPlants:GSMUA_Achr3T16470_001	InterPro:IPR036388	InterPro:IPR038168
UniProt:M0SF63	PFAM:PF02319	PFAM:PF08781	PIRSF:PIRSF009404	PANTHER:PTHR12548	PANTHER:PTHR12548:SF14
SMART:SM01138	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C
InterPro:Transcrpt_fac_DP	UniParc:UPI000295B24C	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G16470_001]

Coordinates

chr3:+:17778723..17781368

Molecular Weight (calculated)

31761.7 Da

IEP (calculated)

6.636

GRAVY (calculated)

-0.637

Length

279 amino acids

Sequence
(BLAST)

001: MHANHSTNIP SGATDRTMIP KCEYVPNLIN SSMQEDEIYE DPDSPAGKKK KAPRIKGWGL RRFSTIVCDK VKEKGRTTYN EVADEIIYEL SSLEKKDLQF
101: VFDEKNIRRR VYDAFNVLMA INVIAKDKKE IKWVGFPSTE TEELAQIKEE KMKLLSKIEQ KVNYLKELEE KFGDLHNLIC RNRVAHKSAS VSSEGIALPF
201: LLVQTTPKAT VEIEISEDMR SVNFEFNGTP FTLHDADSIL RAMRRPTSVE RGHDNNNSTE SPELVADQNC QKLHPASSS

Best Arabidopsis Sequence Match ( AT5G03415.1 )
(BLAST)

001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN

Arabidopsis Description

DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.