Factsheet for HORVU3Hr1G062470.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87325	Sorghum	plastid	46.67	25.84
Zm00001d011597_P002	Maize	nucleus	39.39	25.79
Os01t0678700-01	Rice	cytosol	44.85	25.17
HORVU7Hr1G037090.2	Barley	plastid	43.03	23.91
GSMUA_Achr3P16470_001	Banana	nucleus	36.97	21.86
Solyc09g010670.2.1	Tomato	nucleus	23.03	19.49
PGSC0003DMT400023036	Potato	cytosol, nucleus, plastid	29.09	18.46
HORVU4Hr1G072090.1	Barley	nucleus	33.94	18.01
CDY55548	Canola	nucleus	29.7	17.13
CDX80823	Canola	nucleus	29.09	16.84
Bra005726.1-P	Field mustard	nucleus	28.48	16.61
CDY40359	Canola	nucleus	27.27	15.57
Bra009586.1-P	Field mustard	nucleus	27.27	15.52
AT5G02470.3	Thale cress	nucleus	27.27	15.41
CDY10450	Canola	nucleus	27.27	15.41
VIT_08s0007g00170.t01	Wine grape	nucleus	30.91	13.49
CDY72556	Canola	cytosol	2.42	3.01

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.3	MapMan:15.5.10	UniProt:A0A287LAT6	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU3Hr1G062470
EnsemblPlants:HORVU3Hr1G062470.2	InterPro:IPR036388	PFAM:PF02319	PANTHER:PTHR12548	PANTHER:PTHR12548:SF14	SMART:SM01372
SUPFAM:SSF46785	InterPro:Transcrpt_fac_DP	UniParc:UPI000B468FD4	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

No Description!

Coordinates

chrchr3H:+:476991171..476994764

Molecular Weight (calculated)

18237.9 Da

IEP (calculated)

10.461

GRAVY (calculated)

-0.539

Length

165 amino acids

Sequence
(BLAST)

001: ISLPPFRDSR NITRTAMAPP RGGAAAAAPA ALDLTGVHIL EASSVPPLPK RGGGNAVQRK EAVDPDKDRK KEKAAAQRIT GWGLREYSKI VCEKVEAKGR
101: TTYNEVADEI YSELKSMAHI GQGFDEKNIR RRVYDAFNVL IALRVIAKEK RRYGGWAFQI TDMKS

Best Arabidopsis Sequence Match ( AT5G03415.1 )
(BLAST)

001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN

Arabidopsis Description

DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.