Factsheet for PGSC0003DMT400023036

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010670.2.1	Tomato	nucleus	68.85	91.79
CDY72556	Canola	cytosol	21.54	42.11
Bra005726.1-P	Field mustard	nucleus	45.38	41.7
CDY55548	Canola	nucleus	45.77	41.61
CDX80823	Canola	nucleus	45.38	41.4
CDY40359	Canola	nucleus	45.0	40.48
CDY10450	Canola	nucleus	45.38	40.41
AT5G02470.3	Thale cress	nucleus	45.38	40.41
Bra009586.1-P	Field mustard	nucleus	45.0	40.34
GSMUA_Achr3P16470_001	Banana	nucleus	41.92	39.07
VIT_08s0007g00170.t01	Wine grape	nucleus	55.77	38.36
PGSC0003DMT400021592	Potato	nucleus	49.62	36.24
Zm00001d011597_P002	Maize	nucleus	35.0	36.11
TraesCS3A01G268500.1	Wheat	nucleus, plastid	35.38	35.25
TraesCS3B01G302900.1	Wheat	nucleus, plastid	35.0	34.87
TraesCS3D01G268600.1	Wheat	nucleus, plastid	34.62	34.48
Os01t0678700-01	Rice	cytosol	36.15	31.97
OQU87325	Sorghum	plastid	35.38	30.87
HORVU3Hr1G062470.2	Barley	mitochondrion	18.46	29.09
HORVU7Hr1G037090.2	Barley	plastid	26.15	22.9

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	ncoils:Coil	InterPro:E2F-DP_heterodim
InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR036388	InterPro:IPR038168	UniProt:M1AHN1	PFAM:PF02319	PFAM:PF08781
EnsemblPlantsGene:PGSC0003DMG401008915	PGSC:PGSC0003DMG401008915	EnsemblPlants:PGSC0003DMT400023036	PIRSF:PIRSF009404	PANTHER:PTHR12548	PANTHER:PTHR12548:SF14
SMART:SM01138	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C
InterPro:Transcrpt_fac_DP	UniParc:UPI00029505F2	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:	:

Description

Transcription factor DP, E2 dimerization partner protein [Source:PGSC_GENE;Acc:PGSC0003DMG401008915]

Coordinates

chr9:-:1924149..1929561

Molecular Weight (calculated)

29273.7 Da

IEP (calculated)

6.523

GRAVY (calculated)

-0.557

Length

260 amino acids

Sequence
(BLAST)

001: MDVKISASTI QGFNRRCSEG KSSFRATTDY DNKTLHVNQH AQTSDTAKLK KGSKIVGGGL RQYSIMVCKK VEDKGRITYS EVADEIIAEL MTMENSSSVP
101: LNESDEKNIR RRVYDSLNVL MALDVIERDR KEIRWKGLPN SDARDMDETK KGHAELLAKI GKKASYLKDL EEQLASLQTL KLRNEQSCKS TSGPSQGFSL
201: PFILVQTAPH ATVEVEISED MQLVHFDFNS VPFSLHDDAY VLKLMRNYEL LESESVSQTS

Best Arabidopsis Sequence Match ( AT5G02470.3 )
(BLAST)

001: MSMEMELFVT PEKQRQHPSV SVEKTPVRRK LIVDDDSEIG SEKKGQSRTS GGGLRQFSVM VCQKLEAKKI TTYKEVADEI ISDFATIKQN AEKPLNENEY
101: NEKNIRRRVY DALNVFMALD IIARDKKEIR WKGLPITCKK DVEEVKMDRN KVMSSVQKKA AFLKELREKV SSLESLMSRN QEMVVKTQGP AEGFTLPFIL
201: LETNPHAVVE IEISEDMQLV HLDFNSTPFS VHDDAYILKL MQEQKQEQNR VSSSSSTHHQ SQHSSAHSSS SSCIASGTSG PVCWNSGSID TR

Arabidopsis Description

DPADPA [Source:UniProtKB/TrEMBL;Acc:A0A178ULD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.