Factsheet for VIT_08s0007g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010670.2.1	Tomato	nucleus	33.6	65.13
PGSC0003DMT400023036	Potato	cytosol, nucleus, plastid	38.36	55.77
Bra005726.1-P	Field mustard	nucleus	35.71	47.7
AT5G02470.3	Thale cress	nucleus	36.77	47.6
CDY72556	Canola	cytosol	16.67	47.37
CDX80823	Canola	nucleus	35.19	46.67
Bra009586.1-P	Field mustard	nucleus	35.71	46.55
CDY55548	Canola	nucleus	35.19	46.5
CDY40359	Canola	nucleus	35.45	46.37
CDY10450	Canola	nucleus	34.66	44.86
GSMUA_Achr3P16470_001	Banana	nucleus	31.48	42.65
TraesCS3D01G268600.1	Wheat	nucleus, plastid	27.25	39.46
TraesCS3B01G302900.1	Wheat	nucleus, plastid	27.25	39.46
TraesCS3A01G268500.1	Wheat	nucleus, plastid	27.25	39.46
Zm00001d011597_P002	Maize	nucleus	26.19	39.29
VIT_08s0040g01300.t01	Wine grape	nucleus	10.85	35.65
Os01t0678700-01	Rice	cytosol	27.51	35.37
OQU87325	Sorghum	plastid	27.51	34.9
HORVU3Hr1G062470.2	Barley	mitochondrion	13.49	30.91
VIT_08s0040g01330.t01	Wine grape	nucleus	29.1	30.9
HORVU7Hr1G037090.2	Barley	plastid	19.84	25.25

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	EntrezGene:100240899	wikigene:100240899	MapMan:13.1.2.3	MapMan:15.5.10
ProteinID:CCB55599	ProteinID:CCB55599.1	ncoils:Coil	InterPro:E2F-DP_heterodim	InterPro:E2F_WHTH_DNA-bd_dom	UniProt:F6HLD5
EMBL:FN595991	GO:GO:0000981	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667
GO:GO:0006139	GO:GO:0006259	GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015074	InterPro:IPR036388
InterPro:IPR038168	EntrezGene:LOC100240899	wikigene:LOC100240899	PFAM:PF02319	PFAM:PF08781	PANTHER:PTHR12548
PANTHER:PTHR12548:SF14	SMART:SM01138	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	TIGR:TC56270
InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C	InterPro:Transcrpt_fac_DP	UniParc:UPI0002109B60	ArrayExpress:VIT_08s0007g00170	EnsemblPlantsGene:VIT_08s0007g00170
EnsemblPlants:VIT_08s0007g00170.t01	unigene:Vvi.12597	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002270000	RefSeq:XP_002270000.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:14541923..14548321

Molecular Weight (calculated)

42945.9 Da

IEP (calculated)

7.040

GRAVY (calculated)

-0.418

Length

378 amino acids

Sequence
(BLAST)

001: MANGLGLDLD ISFFQKREHQ NWLLFIRKLA LSHFEVSYKL SATYCSSGIL SCWENQSLKF TSPFWRAESS YWNMMSDRHL GDILGGFDHN HTGKQSPFSV
101: SSSYDHTATA SENTPGVNHL ATDHENNSTP LYDSAAKKKR VSRIIGGGLR QFSIIVCKKV ENKRTTTYSE VADEIIAEFA AAHSKTAVSL DEFDEKNIRR
201: RVYDALNVLM ALDIITRDKK EIRWKGLPTA DWKDIEEVKA LRVKLMTRME KKTAYLKDLE DQIVGLQNLM LRNQQLLKSG NVPSEGFPLP FILVQTSPHA
301: TVEIEISEDM QLVHFDFNST PFSLHDDAYI LKLMRCYQLP AESRHVSQSS SVHSTSSSDI ASGSTKPFYW NSEMDTLK

Best Arabidopsis Sequence Match ( AT5G02470.3 )
(BLAST)

001: MSMEMELFVT PEKQRQHPSV SVEKTPVRRK LIVDDDSEIG SEKKGQSRTS GGGLRQFSVM VCQKLEAKKI TTYKEVADEI ISDFATIKQN AEKPLNENEY
101: NEKNIRRRVY DALNVFMALD IIARDKKEIR WKGLPITCKK DVEEVKMDRN KVMSSVQKKA AFLKELREKV SSLESLMSRN QEMVVKTQGP AEGFTLPFIL
201: LETNPHAVVE IEISEDMQLV HLDFNSTPFS VHDDAYILKL MQEQKQEQNR VSSSSSTHHQ SQHSSAHSSS SSCIASGTSG PVCWNSGSID TR

Arabidopsis Description

DPADPA [Source:UniProtKB/TrEMBL;Acc:A0A178ULD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.