Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g078430.1.1 | Tomato | nucleus | 56.46 | 56.78 |
| PGSC0003DMT400021592 | Potato | nucleus | 56.46 | 56.46 |
| AT5G03415.1 | Thale cress | nucleus | 52.25 | 48.31 |
| CDX80867 | Canola | nucleus | 43.26 | 48.12 |
| CDY44365 | Canola | nucleus | 45.79 | 47.25 |
| Bra005763.1-P | Field mustard | nucleus | 43.26 | 42.19 |
| CDY11252 | Canola | nucleus | 42.7 | 42.11 |
| VIT_08s0007g00170.t01 | Wine grape | nucleus | 30.9 | 29.1 |
| GSMUA_Achr5P12500_001 | Banana | mitochondrion, nucleus | 10.39 | 24.03 |
| VIT_08s0040g01300.t01 | Wine grape | nucleus | 3.93 | 12.17 |
Protein Annotations
Description
No Description!
Coordinates
chr8:-:12386803..12399152
Molecular Weight (calculated)
38567.4 Da
IEP (calculated)
9.192
GRAVY (calculated)
-0.576
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTGGSHQED GEKNPATVSK GGATRSWGTT VSGQSVSTSG SVGSPSSRSE AALATPASEN TFLRLNHLDI HGDDAGSQGA ANRKKKRGQR AVGGDKSGRG
101: LRQFSMKVCE KVESKGRTTY NEVADELVAE FADPSNSLTS PDQQQYDEKN IRRRVYDALN VLMAMDIISK DKKEIQWKGL PRTSLNDIEE LKTDRIGLRG
201: RIEKKAAYLQ ELEEQFVGLQ NLIQRNEQLY SSGNAPSGGV ALPFILVQVG FEPYQKAIPA RALKSVLLPF RSMTKYGMAS SQVSSVTSPE SGGRSEIPNL
301: GGNDSSPILI TGHKLNGHNY LQWSQSVLLF ICGKGKDEYL TGEAVMPELQ NRVSGS
101: LRQFSMKVCE KVESKGRTTY NEVADELVAE FADPSNSLTS PDQQQYDEKN IRRRVYDALN VLMAMDIISK DKKEIQWKGL PRTSLNDIEE LKTDRIGLRG
201: RIEKKAAYLQ ELEEQFVGLQ NLIQRNEQLY SSGNAPSGGV ALPFILVQVG FEPYQKAIPA RALKSVLLPF RSMTKYGMAS SQVSSVTSPE SGGRSEIPNL
301: GGNDSSPILI TGHKLNGHNY LQWSQSVLLF ICGKGKDEYL TGEAVMPELQ NRVSGS
001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN
Arabidopsis Description
DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.