Factsheet for GSMUA_Achr5P12500_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr4P06650_001
GSMUA_Achr4P13630_001
GSMUA_Achr4P17950_001
GSMUA_Achr6P07430_001
GSMUA_Achr6P08220_001
GSMUA_Achr6P12080_001
GSMUA_Achr6P27570_001
GSMUA_Achr6P29170_001
GSMUA_Achr7P14480_001
GSMUA_Achr7P14490_001
GSMUA_Achr8P00470_001
GSMUA_Achr8P16370_001
GSMUA_Achr9P07190_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03415.1	GSMUA_Achr6P27570_001	AT1G10840.1	20706207
AT5G03415.1	GSMUA_Achr9P07190_001	AT1G10840.1	20706207
AT5G03415.1	GSMUA_Achr4P17950_001	AT1G47870.1	11891240
AT5G03415.1	GSMUA_Achr6P07430_001	AT1G71380.1	20706207
AT5G03415.1	GSMUA_Achr6P29170_001	AT2G05830.1	20706207
AT5G03415.1	GSMUA_Achr4P06650_001	AT3G04620.1	20706207
AT5G03415.1	GSMUA_Achr4P13630_001	AT3G04620.1	20706207
AT5G03415.1	GSMUA_Achr6P08220_001	AT3G12280.1	20706207
AT5G03415.1	GSMUA_Achr8P00470_001	AT3G12280.1	20706207
AT5G03415.1	GSMUA_Achr10P...	AT4G19210.1	20706207
AT5G03415.1	GSMUA_Achr7P14480_001	AT4G19210.1	20706207
AT5G03415.1	GSMUA_Achr7P14490_001	AT4G19210.1	20706207
AT5G03415.1	GSMUA_Achr10P...	AT4G24820.1	20706207
AT5G03415.1	GSMUA_Achr6P12080_001	AT4G24820.1	20706207
AT5G03415.1	GSMUA_Achr8P16370_001	AT4G24820.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g01300.t01	Wine grape	nucleus	45.45	60.87
GSMUA_Achr1P00430_001	Banana	nucleus	76.62	34.1
KRH27723	Soybean	nucleus	59.09	27.0
KRH29008	Soybean	nucleus	57.79	26.57
Solyc10g078430.1.1	Tomato	nucleus	60.39	26.27
KRH24035	Soybean	nucleus	55.84	25.9
PGSC0003DMT400021592	Potato	nucleus	59.74	25.84
KRH77687	Soybean	nucleus	56.49	25.74
CDX80867	Canola	nucleus	46.1	22.19
CDY44365	Canola	nucleus	48.7	21.74
Bra005763.1-P	Field mustard	nucleus	48.05	20.27
AT5G03415.1	Thale cress	nucleus	49.35	19.74
CDY11252	Canola	nucleus	46.1	19.67
GSMUA_Achr3P16470_001	Banana	nucleus	28.57	15.77
VIT_08s0040g01330.t01	Wine grape	nucleus	24.03	10.39
GSMUA_Achr5P12510_001	Banana	nucleus	3.25	2.05

Protein Annotations

Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	InterPro:E2F-DP_heterodim	GO:GO:0003674	GO:GO:0003700
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G12500_001
EnsemblPlants:GSMUA_Achr5P12500_001	EnsemblPlants:GSMUA_Achr5T12500_001	InterPro:IPR038168	UniProt:M0SXX9	PFAM:PF08781	PANTHER:PTHR12548
PANTHER:PTHR12548:SF15	SMART:SM01138	SUPFAM:SSF144074	InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C	InterPro:Transcrpt_fac_DP
UniParc:UPI00029560D7	:	:	:	:	:

Description

transcription factor Dp, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G12500_001]

Coordinates

chr5:-:8959645..8962787

Molecular Weight (calculated)

17232.7 Da

IEP (calculated)

6.855

GRAVY (calculated)

-0.292

Length

154 amino acids

Sequence
(BLAST)

001: MSLFKSCLGM VKKINAPHFF FIGLQSLVQR NEQLHGSEHV PSGGVALPFI LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDSYVLK AMGFCEREQH
101: DGALEPSSSG GDCSSMIGMH QYHTWQPSRP SSMVRMITSP PKPGILKARV KNEH

Best Arabidopsis Sequence Match ( AT5G03415.2 )
(BLAST)

001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLLCEKVE SKGRTTYNEV ADELVAEFAL PNNDGTSPDQ QQYDEKNIRR RVYDALNVLM AMDIISKDKK EIQWRGLPRT SLSDIEELKN ERLSLRNRIE
201: KKTAYSQELE EQYVGLQNLI QRNEHLYSSG NAPSGGVALP FILVQTRPHA TVEVEISEDM QLVHFDFNST PFELHDDNFV LKTMKFCDQP PQQPNGRNNS
301: QLVCHNFTPE NPNKGPSTGP TPQLDMYETH LQSQQHQQHS QLQIIPMPET NNVTSSADTA PVKSPSLPGI MNSSMKPEN

Arabidopsis Description

DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.