Factsheet for GSMUA_Achr5P12510_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P00430_001	Banana	nucleus	78.69	55.49
Os03t0152100-01	Rice	nucleus	24.18	55.14
Zm00001d014132_P001	Maize	nucleus	39.75	45.12
HORVU4Hr1G072090.1	Barley	nucleus	50.0	39.23
Os10t0440100-00	Rice	nucleus	54.92	38.73
TraesCS1A01G139700.1	Wheat	plastid	54.92	38.51
EER91566	Sorghum	nucleus	53.28	38.24
TraesCS1B01G156900.1	Wheat	plastid	54.51	38.22
TraesCS1D01G139300.1	Wheat	plastid	54.51	38.22
KXG21054	Sorghum	nucleus	43.85	37.02
EES08854	Sorghum	nucleus	48.77	35.63
TraesCS4B01G268800.1	Wheat	nucleus	54.92	35.36
Zm00001d027709_P002	Maize	nucleus	55.74	35.23
EER95490	Sorghum	nucleus	55.74	34.69
TraesCS4A01G036000.1	Wheat	plastid	54.1	34.65
TraesCS4D01G268100.2	Wheat	nucleus	54.92	34.45
Zm00001d048412_P001	Maize	plastid	50.0	29.76
GSMUA_Achr3P16470_001	Banana	nucleus	29.51	25.81
GSMUA_Achr5P12500_001	Banana	mitochondrion, nucleus	2.05	3.25

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.3	MapMan:15.5.10	InterPro:E2F-DP_heterodim	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G12510_001
EnsemblPlants:GSMUA_Achr5P12510_001	EnsemblPlants:GSMUA_Achr5T12510_001	InterPro:IPR036388	UniProt:M0SXY0	PFAM:PF02319	PANTHER:PTHR12548
PANTHER:PTHR12548:SF15	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	InterPro:Transcrpt_fac_DP	UniParc:UPI0002950479
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

transcription factor Dp, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G12510_001]

Coordinates

chr5:-:8962977..8975622

Molecular Weight (calculated)

26736.4 Da

IEP (calculated)

8.798

GRAVY (calculated)

-0.762

Length

244 amino acids

Sequence
(BLAST)

001: MDEGSKRTAN FRMAPSGGRS SLGAPAFSGG HSASTSGSAG SPSSRSEPTE TNPASESALV RLNHLDIHGG DEGTPVGAVS GKKKKRGARA VGGDKSGRGL
101: RQFSMKVCEK VESKGRTTYN EVADELVTEF TDPNNNPGSQ DQQQYEEKNI RRRVYDALNV LMAMDIISKD KKEIQWKGLP RTSLNDVEEL KAEQIGLKNR
201: IEKKTAYLQE LQNQVRLPVH SNIICVRQYF CLEIVLISSD SDHQ

Best Arabidopsis Sequence Match ( AT5G03415.1 )
(BLAST)

001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN

Arabidopsis Description

DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.