Factsheet for TraesCS4B01G268800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G072090.1	Barley	nucleus	79.68	97.11
TraesCS4D01G268100.2	Wheat	nucleus	98.68	96.14
TraesCS4A01G036000.1	Wheat	plastid	94.72	94.23
EER95490	Sorghum	nucleus	75.99	73.47
Zm00001d027709_P002	Maize	nucleus	74.41	73.06
TraesCS1B01G156900.1	Wheat	plastid	64.12	69.83
Os03t0152100-01	Rice	nucleus	19.53	69.16
Zm00001d048412_P001	Maize	plastid	70.98	65.61
GSMUA_Achr1P00430_001	Banana	nucleus	58.31	63.87
GSMUA_Achr5P12510_001	Banana	nucleus	35.36	54.92
TraesCS3B01G302900.1	Wheat	nucleus, plastid	26.12	37.93

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	ncoils:Coil	InterPro:E2F-DP_heterodim
InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR036388	InterPro:IPR038168	PFAM:PF02319	PFAM:PF08781
PIRSF:PIRSF009404	PANTHER:PTHR12548	PANTHER:PTHR12548:SF15	SMART:SM01138	SMART:SM01372	SUPFAM:SSF144074
SUPFAM:SSF46785	InterPro:TF_DP_C_sf	EnsemblPlantsGene:TraesCS4B01G268800	EnsemblPlants:TraesCS4B01G268800.1	InterPro:Transc_factor_DP_C	InterPro:Transcrpt_fac_DP
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	TIGR:cd14458	SEG:seg	:	:

Description

No Description!

Coordinates

chr4B:+:543863382..543868001

Molecular Weight (calculated)

40664.4 Da

IEP (calculated)

5.894

GRAVY (calculated)

-0.708

Length

379 amino acids

Sequence
(BLAST)

001: MVSGVPHRPD ENGGGGGPSF PQQPAPVGTP PPSSGLAHSA STSGGSAGGS PSSRSEQQGP AATNGAGPAA STPASDGTAF LRLNNLDING DDAPSSQAPI
101: SIKKKKRRAA AVGPDKGGRG LRQFSMKVCE KVESKGRTTY NEVADELVAE FTDPNNNIEP PDPDNPNAQQ YDEKNIRRRV YDALNVLMAM DIISKDKKEI
201: QWKGLPRTSI NDIEELQADL AGVKGRIEKK SAYLQELQDQ YLGMQNLINR NEQLYGSGNI PSGGVALPFI LIQTRPHATV EVEISEDMQL VHFDFNTTPF
301: ELHDDSYVLK ALNSYGKEEN AGTSEPISNG CEGSSTPNFY RHQIQQSAMA SNGTNRLPSS PPPPVPGILK GRVKHEHLY

Best Arabidopsis Sequence Match ( AT5G03415.1 )
(BLAST)

001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN

Arabidopsis Description

DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.