Factsheet for Zm00001d048412_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027709_P002	Maize	nucleus	84.15	89.38
EER95490	Sorghum	nucleus	83.66	87.5
HORVU4Hr1G072090.1	Barley	nucleus	57.56	75.88
TraesCS4B01G268800.1	Wheat	nucleus	65.61	70.98
TraesCS4A01G036000.1	Wheat	plastid	65.12	70.08
TraesCS4D01G268100.2	Wheat	nucleus	65.12	68.64
GSMUA_Achr1P00430_001	Banana	nucleus	52.44	62.14
Os03t0152100-01	Rice	nucleus	15.37	58.88
Zm00001d014132_P001	Maize	nucleus	29.27	55.81
GSMUA_Achr5P12510_001	Banana	nucleus	29.76	50.0
Zm00001d011597_P002	Maize	nucleus	21.22	34.52

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	EntrezGene:100383020	MapMan:13.1.2.3	MapMan:15.5.10	UniProt:A0A1D6PK03
ProteinID:AQL09610.1	ProteinID:AQL09612.1	ncoils:Coil	InterPro:E2F-DP_heterodim	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR036388
InterPro:IPR038168	PFAM:PF02319	PFAM:PF08781	PIRSF:PIRSF009404	PANTHER:PTHR12548	PANTHER:PTHR12548:SF15
SMART:SM01138	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C
InterPro:Transcrpt_fac_DP	UniParc:UPI0008454607	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d048412	EnsemblPlants:Zm00001d048412_P001
EnsemblPlants:Zm00001d048412_T001	SEG:seg	:	:	:	:

Description

E2F-DP-transcription factor 26Transcription factor-like protein DPB

Coordinates

chr9:+:155819418..155824302

Molecular Weight (calculated)

44390.1 Da

IEP (calculated)

6.446

GRAVY (calculated)

-0.570

Length

410 amino acids

Sequence
(BLAST)

001: MVSGAAHNPG GGAAAQTTQR SPPQLGARTA LATPPPVSGG AAHSASTSGG TAGSPPSSRS EQHAPDGAVK GPALGTAPAA AAASTPASDS TFLRLNNLDI
101: NGDDAPSSQA PTRLATQTLV YSELLILVNS KKKRRGTRAV GPDKGNRGLR QFSMKEHPFF DTPVVLSFHI KVNSLEVADE LVAEFTDPNN NIEAPDPDNP
201: NAQQYDEKNI RRRVYDALNV LMAMDIISKD KKEIQWKGLP RTSISDIEEL KTELVGLKGR IEKKSVYLQE LQDQYVGLQN LIQRNEQLYG SGNTPSGGVA
301: LPFILVQTRP HATVEVEISE DMQLVHFDFN STPFELHDDS YVLKEMRFCG REQHDGTQES ISNGGESSNV SNIYWQQAQR MEMPNNGTVR LSSSPPIPGI
401: LKGRVKHEQH

Best Arabidopsis Sequence Match ( AT5G03415.1 )
(BLAST)

001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN

Arabidopsis Description

DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.