Factsheet for HORVU4Hr1G072090.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G268800.1	Wheat	nucleus	97.11	79.68
TraesCS4A01G036000.1	Wheat	plastid	97.11	79.27
TraesCS4D01G268100.2	Wheat	nucleus	96.78	77.38
Os03t0152100-01	Rice	nucleus	22.83	66.36
Zm00001d027709_P002	Maize	nucleus	79.74	64.25
EER95490	Sorghum	nucleus	80.06	63.52
GSMUA_Achr1P00430_001	Banana	nucleus	67.85	60.98
Zm00001d048412_P001	Maize	plastid	75.88	57.56
GSMUA_Achr5P12510_001	Banana	nucleus	39.23	50.0
HORVU3Hr1G062470.2	Barley	mitochondrion	18.01	33.94
HORVU7Hr1G037090.2	Barley	plastid	23.47	24.58

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	UniProt:A0A287PL96	ncoils:Coil
InterPro:E2F-DP_heterodim	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005667	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006351	GO:GO:0006355
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042023
GO:GO:0046982	EnsemblPlantsGene:HORVU4Hr1G072090	EnsemblPlants:HORVU4Hr1G072090.1	InterPro:IPR036388	InterPro:IPR038168	PFAM:PF02319
PFAM:PF08781	PIRSF:PIRSF009404	PANTHER:PTHR12548	PANTHER:PTHR12548:SF15	SMART:SM01138	SMART:SM01372
SUPFAM:SSF144074	SUPFAM:SSF46785	InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C	InterPro:Transcrpt_fac_DP	UniParc:UPI000B46A22A
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:583405849..583410530

Molecular Weight (calculated)

34482.5 Da

IEP (calculated)

5.447

GRAVY (calculated)

-0.702

Length

311 amino acids

Sequence
(BLAST)

001: GPASTPASDG TAFLHLNNLD INGDDAPSSQ APISIKKKKR RAAAVGPDKG GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFTDPNNN IEPPDPDNPN
101: AQQYDEKNIR RRVYDALNVL MAMDIISKDK KEIQWKGLPR TSINDIEELQ AELTEVKGRI EKKSAYLQEL QDQYLGMQNL INRNEQLYGS GNIPSGGVAL
201: PFILIQTRPH ATVEVEISED MQLVHFDFNT TPFELHDDSY VLKALNSYGK EENAGTPELI SNGCEGSSTP NIYRHQIQQS AMTSNGANRL PSSPPPVPGI
301: LKGRVKHEHL Y

Best Arabidopsis Sequence Match ( AT5G03415.1 )
(BLAST)

001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN

Arabidopsis Description

DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.