Factsheet for TraesCS4D01G268100.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G268800.1	Wheat	nucleus	96.14	98.68
HORVU4Hr1G072090.1	Barley	nucleus	77.38	96.78
TraesCS4A01G036000.1	Wheat	plastid	92.29	94.23
EER95490	Sorghum	nucleus	74.04	73.47
Zm00001d027709_P002	Maize	nucleus	71.98	72.54
Os03t0152100-01	Rice	nucleus	19.02	69.16
TraesCS1D01G139300.1	Wheat	plastid	61.7	68.97
Zm00001d048412_P001	Maize	plastid	68.64	65.12
GSMUA_Achr1P00430_001	Banana	nucleus	57.33	64.45
GSMUA_Achr5P12510_001	Banana	nucleus	34.45	54.92
TraesCS3D01G268600.1	Wheat	nucleus, plastid	25.19	37.55

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	ncoils:Coil	InterPro:E2F-DP_heterodim
InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR036388	InterPro:IPR038168	PFAM:PF02319	PFAM:PF08781
PIRSF:PIRSF009404	PANTHER:PTHR12548	PANTHER:PTHR12548:SF15	SMART:SM01138	SMART:SM01372	SUPFAM:SSF144074
SUPFAM:SSF46785	InterPro:TF_DP_C_sf	EnsemblPlantsGene:TraesCS4D01G268100	EnsemblPlants:TraesCS4D01G268100.2	InterPro:Transc_factor_DP_C	InterPro:Transcrpt_fac_DP
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	TIGR:cd14458	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:+:439655894..439660594

Molecular Weight (calculated)

41616.5 Da

IEP (calculated)

5.663

GRAVY (calculated)

-0.709

Length

389 amino acids

Sequence
(BLAST)

001: MVSGVPHRPD ENGGGGGPSF PQQPAPVGTP PPSSGPAHSA STSGGSAGGS PSSRSEQQGP AATNGAGPGP AASTPASDGT AFLRLNNLDI NGDDAPSSQA
101: PISALSDFTN SIKKKKRRAA AVGPDKGGRG LRQFSMKVCE KVESKGRTTY NEVADELVAE FTDPNNNIEP PDPDNPNAQQ YDEKNIRRRV YDALNVLMAM
201: DIISKDKKEI QWKGLPRTSI NDIEELQADL AGVKGRIEKK SAYLQELQDQ YLGMQNLINR NEQLYGSGNI PTGGVALPFI LIQTRPHATV EVEISEDMQL
301: VHFDFNTTPF ELHDDSYVLK ALNSYGKEEN AGAPEPISNG CEGSSTPNMY RHQIQQSAMA SNGTNRLPSS PPPPVPGILK GRVKHEHLY

Best Arabidopsis Sequence Match ( AT5G02470.3 )
(BLAST)

001: MSMEMELFVT PEKQRQHPSV SVEKTPVRRK LIVDDDSEIG SEKKGQSRTS GGGLRQFSVM VCQKLEAKKI TTYKEVADEI ISDFATIKQN AEKPLNENEY
101: NEKNIRRRVY DALNVFMALD IIARDKKEIR WKGLPITCKK DVEEVKMDRN KVMSSVQKKA AFLKELREKV SSLESLMSRN QEMVVKTQGP AEGFTLPFIL
201: LETNPHAVVE IEISEDMQLV HLDFNSTPFS VHDDAYILKL MQEQKQEQNR VSSSSSTHHQ SQHSSAHSSS SSCIASGTSG PVCWNSGSID TR

Arabidopsis Description

DPADPA [Source:UniProtKB/TrEMBL;Acc:A0A178ULD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.